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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgaacatgaaatcctatttacattgtttcttttggtttattgctggcttaacatccatcatggtgcagGCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGG

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03760.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G012284_T01 (Zea mays), 3'ss of exon 5
gtaactgaacatgaaatcctat-ttacattgtttcttttggtttattgctggcttaacatccatcatggtgcagGCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGG
||||    |  | || ||  || | | ||  |||  | ||   ||||     | | ||| |  | ||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||||| ||||||||| ||| ||
gtaatccgatgtaaattctcatgtcatatgtttttatgtgtaatattctctccctgacacctgttatggtacagGCTGAGGCTACTTGGGCATTCACAGTTCTTGGGTACATCGGGAAACTTCTATTTGGTGTTGTTGG

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G871262_T02 (Zea mays), 3'ss of exon 7
gtaactgaacatgaaatcctat-ttacattgtttcttttggtttattgctggcttaacatccatcatggtgcagGCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGG
||||    |||| || | | || | | ||| ||| |||  | || |  |   ||| |||    | ||||  ||||| |||||||| ||||| || ||||| ||||| ||||||||||||||| ||||||||| ||| ||
gtaatccgacataaattaccatgtcatattttttgtttaaggttctctc---cttgacacatgttatggcacagGCAGAGGCTACTTGGGCATTCACAGTCCTTGGGTACATTGGAAAACTTATATTTGGTGTTGTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684950|gb|CK073637.1|CK073637
EST:     TAGAAGATGACATGAAGGCTCTTGAAGAGATGTACCCTCAAGGAGAACAG                         GCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTA
genomic: TAGAAGATGACATGAAGGCTCTTGAAGAGATGTACCCTCAAGGAGAACAGgtaactgaac ... catggtgcagGCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttacattgtttcttttggtttattgctggcttaacatccatcatggtgcagGCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGG
                                gcttaac  putative branch site (score: 3)
            tttctttt  TA-rich tract