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gtttgtatttcttaattagacgcttttgatttggcatttgtgacctctgaagtgattgaagttttttctgtttacgtggtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGACTGAAGTCCGAAATTGGTGTTTTCAGATATTTCAAGCTTTGAGTCACA
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATG GAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGEST: gi|29638208|gb|CB643217.1|CB643217
genomic: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATGgtttgtattt ... gtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAG
EST: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATG GAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGEST: gi|29641486|gb|CB646493.1|CB646493
genomic: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATGgtttgtattt ... gtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAG
EST: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATG GAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGEST: gi|58677581|gb|CK066268.1|CK066268
genomic: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATGgtttgtattt ... gtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAG
EST: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATG GAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGEST: gi|29685601|gb|CB681876.1|CB681876
genomic: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATGgtttgtattt ... gtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAG
EST: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATG GAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGEST: gi|58689016|gb|CK077703.1|CK077703
genomic: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATGgtttgtattt ... gtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAG
EST: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATG GAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAG
genomic: AGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATGgtttgtattt ... gtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAG
gcatttgtgacctctgaagtgattgaagttttttctgtttacgtggtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGACTGAAGTCCGAAATTGGTGTTTTCAGATATTTCAAGCTTTGAGTCACA
aagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatttcttaattagacgcttttgatttggcatttgtgacctctgaagtgattgaagttttttctgtttacgtggtgattttagGAATGCAATCTCTACCAGCTGATGAAGAGCAGGGGGAAGCCCTTTTCAGAGACTGAAGTCCGAAATTGGTGTTTTCAGATATTTCAAGCTTTGAGTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT