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gtgaggtggacttgcgatctggtgcatttggttgggtgatcattaatgctgcttatttatgatgattctggagcatctggctggatgattaatgctgcttatttataatgattttttttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATCAGTTTTAGGAACGGCTGCAAAGGTGGTCCTTAACAAAGAGTCAACAAC
species | Oryza sativa |
transcript | LOC_Os06g02380.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|6934900|gb|AU082437.1|AU082437
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|87011216|gb|CI287893.1|CI287893
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|29616041|gb|CB621053.1|CB621053
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|88325601|gb|CI648035.1|CI648035
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|218493375|gb|FG949729.1|FG949729
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|58687616|gb|CK076303.1|CK076303
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|86906130|gb|CI292661.1|CI292661
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATEST: gi|58690567|gb|CK079254.1|CK079254
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
EST: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAG CAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
genomic: TGGTGAGCGCAAGACCCAGTACTTGGATGATATTGCCATTCTAACTGGAGgtgaggtgga ... ttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAAT
gcatctggctggatgattaatgctgcttatttataatgattttttttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATCAGTTTTAGGAACGGCTGCAAAGGTGGTCCTTAACAAAGAGTCAACAAC
gattaat putative branch site (score: 3)
ttttttttctctgc putative PPT
ttatttataatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggtggacttgcgatctggtgcatttggttgggtgatcattaatgctgcttatttatgatgattctggagcatctggctggatgattaatgctgcttatttataatgattttttttctctgcagCAACTGTAATCAGGGATGAAGTTGGGCTGTCACTTGACAAGGCAGACAAATCAGTTTTAGGAACGGCTGCAAAGGTGGTCCTTAACAAAGAGTCAACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG