Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgcttctgaaccttacctttttgcatggataatttaagaatctgagtaattcttttgcatgctaaattttgcatggtatcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGAACGTGGAAGTCTACTAATTCTTCCAATTTTCCTCACATCTGTTTCTTTT

Basic information

species Oryza sativa
transcript LOC_Os06g01850.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g01850.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G168143_T01 (Zea mays), 3'ss of exon 7
----gtatatatgcttctgaaccttacctttttgcatggataatttaagaatctgagtaattcttttgcatgctaaattttgcatggtatcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGAACGTGGAAGTCTACTAATTCTTCCAATTTTCCTCACATCTGTTTCTTTT-
    | | |||  |||   | |   ||||||         |  | |        | |       ||||  |   | || |||| || | |   ||| |||||||||||||   || ||||||||||| ||||||| ||| || |||||||| ||||| |||||||||  |    |||||| |      |  ||| | || 
gtatgcagataatctttcaatctgaacctttagttccaactgctcttgatggtggcgctgagactttgtgttgcatatattgcttgct-taaatgtcagGAATCGACTGGTTCGACTACAAGAAGCAGCTGAAGAGGGGAGATCAATGGAATGTGGAGGTCTACTAAC-CGCTGAATTTTGCAGCTGACATTTTGTGTTG

upper sequence: LOC_Os06g01850.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA11G08230.1 (Glycine max), 3'ss of exon 8
--gtatatatgcttctgaaccttacctttttgcatggataatttaag-----aatctgagtaattcttttgcatgctaaattttgcatggtatcgttgt-tagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGAACGTGGAAGTCTACTAATTCTTCCAATTTTC-CTCACATCTGTTTCTTTT
   ||  |    |  | |     |  ||| | ||   ||||  | ||     |||| ||| ||||  |||       |  ||  |   | | | || || |||| || || |||  ||| ||||||| |||| |||||||||  ||||||||||| || ||||||||||||||  |   | || | ||  |     | || |  
gtttaccttaaatatttactaagaaatttatccaaaaataaccttagcccagaatcagagaaatttgttt---catcatgttgagttggcttttgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAATGTCGAAGTCTACTAATTAATATCACTTGCACTTGCTCAGATATCATG-

upper sequence: LOC_Os06g01850.1 (Oryza sativa), 3'ss of exon 7
lower sequence: AT1G20020.3 (Arabidopsis thaliana), 3'ss of exon 8
gtatatat-gcttctgaaccttacctttttgcatggataatttaagaatctgagtaattcttttgcatgctaaattttgcatggtatcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGAACGTGGAAGTCTACTAATTCTTCCAATTTTCCTCACATCTGTTTCTTTT-
|||   |  |||  | ||    ||     | | || |  ||| |      ||  |||  |  |  ||  ||||    |   ||||   | | ||||| || ||||||  |||||||||||||||  |||||||||  |||||||||||||| |||||||||| || |    |   ||   ||  |||||  |     
gtaagaagagctaattaataacactccaattcttgaaacattca-----ttgcataag-caataacactctaatgactttgtggt---ggttttagGTATTGACTGGTTTGATTACAAGAAGCAGTTGAAGAAGGCAGAGCAATGGAACGTTGAAGTCTACTGAT-CAAAAAGCCTTTGACATTTCTGTAGCAAAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657697|gb|CB653972.1|CB653972
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|38473758|gb|CF957890.1|CF957890
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86833568|gb|CI336357.1|CI336357
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86869127|gb|CI335694.1|CI335694
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAAGCTGAAGAAGGGCGAGCAATGG
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAA-CTGAAGAAGGGCGAGCAATGG
EST: gi|86253303|gb|CI058228.1|CI058228
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86524406|gb|CI164612.1|CI164612
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88829290|gb|CI074160.1|CI074160
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86880051|gb|CI340049.1|CI340049
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88201693|gb|CI202048.1|CI202048
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86844456|gb|CI337733.1|CI337733
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86517850|gb|CI158056.1|CI158056
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88545766|gb|CI475348.1|CI475348
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86521026|gb|CI161232.1|CI161232
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88544188|gb|CI474262.1|CI474262
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88980632|gb|CI026694.1|CI026694
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86522263|gb|CI162469.1|CI162469
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88662652|gb|CI471617.1|CI471617
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86535275|gb|CI175481.1|CI175481
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86534942|gb|CI175148.1|CI175148
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86537200|gb|CI177406.1|CI177406
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAATCTGAAGAAGGGCGAGCAATGG
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAA-CTGAAGAAGGGCGAGCAATGG
EST: gi|29659028|gb|CB655303.1|CB655303
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|38475687|gb|CF959820.1|CF959820
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86902962|gb|CI312339.1|CI312339
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86536909|gb|CI177115.1|CI177115
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86896479|gb|CI328867.1|CI328867
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88262828|gb|CI364406.1|CI364406
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86535334|gb|CI175540.1|CI175540
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88217511|gb|CI217360.1|CI217360
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|29683077|gb|CB679352.1|CB679352
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86863375|gb|CI333570.1|CI333570
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86874005|gb|CI334537.1|CI334537
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86864039|gb|CI332947.1|CI332947
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86250594|gb|CI003712.1|CI003712
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCCATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86420526|gb|CI056515.1|CI056515
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|87025972|gb|CI257130.1|CI257130
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86896166|gb|CI330105.1|CI330105
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|29683657|gb|CB679932.1|CB679932
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88832387|gb|CI019328.1|CI019328
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|29685686|gb|CB681961.1|CB681961
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86880970|gb|CI339230.1|CI339230
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86252076|gb|CI055813.1|CI055813
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86253156|gb|CI058081.1|CI058081
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86859743|gb|CI345405.1|CI345405
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86851854|gb|CI316423.1|CI316423
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|87026011|gb|CI257169.1|CI257169
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|33799855|gb|CF325793.1|CF325793
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|88844088|gb|CI001145.1|CI001145
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|89161746|gb|CI100906.1|CI100906
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
EST: gi|86527241|gb|CI167447.1|CI167447
EST:     CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATG                         GAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA
genomic: CATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 66 (downstream exon)
Score: 39

GAGCTCCTGAAGAAGGACCACACCTATGTGTACATGTGTGGACTGAAAGGCATGGAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGgtatatatgc ... tcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGAACGTGGAAGTCTACTAATTCTTCCAATTTTCCTCACATCTGTTTCTTTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagaatctgagtaattcttttgcatgctaaattttgcatggtatcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGAACGTGGAAGTCTACTAATTCTTCCAATTTTCCTCACATCTGTTTCTTTT
                          tgctaaa  putative branch site (score: 39)
             taattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatatgcttctgaaccttacctttttgcatggataatttaagaatctgagtaattcttttgcatgctaaattttgcatggtatcgttgttagGAATCGACTGGGCTGATTACAAGAAGCAACTGAAGAAGGGCGAGCAATGGAACGTGGAAGTCTACTAATTCTTCCAATTTTCCTCACATCTGTTTCTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG