1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaatttgccgtcctaactttttcatcaaaaacctttgtttacacttcacatttagcttttatccctagagccttaggagttccaaataacttgggacagaaattcagtcttgtttttctgtccccatcaatctggcaattctctgtcacccattaacttgtattacgttgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGCTGGAAAAGCTAATGCAAGACCAGGAAGCAATGAGGGCATCACTTCTGC
species | Oryza sativa |
transcript | LOC_Os05g51530.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|29656670|gb|CB652945.1|CB652945
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|88762888|gb|CI772444.1|CI772444
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: GTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|218479849|gb|FG959490.1|FG959490
genomic: GTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|29674593|gb|CB670868.1|CB670868
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: TTGACAACTTTAGCAAACAATGTTACCGTGTACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|25802832|gb|CA758793.1|CA758793
genomic: TTGACAACTTT-------AA-GGT-CCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|33381011|gb|CF196354.1|CF196354
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|38565596|gb|CK085049.1|CK085049
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|58654927|gb|CK043607.1|CK043607
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: GTGCACGT-AAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTCA-GAAGGAGAGEST: gi|58590593|gb|CF988901.1|CF988901
genomic: GTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGT-AGGAAGGA-AG
EST: AGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAGGCACAGGAAAGTAGGAAGGAAGAGEST: gi|29612870|gb|CB617883.1|CB617883
genomic: AGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAG GTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgc ... tgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAG
ccatcaatctggcaattctctgtcacccattaacttgtattacgttgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGCTGGAAAAGCTAATGCAAGACCAGGAAGCAATGAGGGCATCACTTCTGC
cattaac putative branch site (score: 2)
attaacttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgccgtcctaactttttcatcaaaaacctttgtttacacttcacatttagcttttatccctagagccttaggagttccaaataacttgggacagaaattcagtcttgtttttctgtccccatcaatctggcaattctctgtcacccattaacttgtattacgttgaaatacagGTTCGCGATTTTGAGTATAGTTCTGAAGCACAGGAAAGTAGGAAGGAAGAGCTGGAAAAGCTAATGCAAGACCAGGAAGCAATGAGGGCATCACTTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
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