1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaatctgtgggcgcatttctgtttcactgttgatgatatattataaccattaacacctatcttttcttcactgagaagcttattttacttatctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTGACTTTGATCCTGCTTTCTCATTATTACTTACTAACCCACCATTGGCTA
species | Oryza sativa |
transcript | LOC_Os05g50480.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATG CAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTEST: gi|58665344|gb|CK054030.1|CK054030
genomic: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATGgtattggctt ... atctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGT
EST: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATG CAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTEST: gi|58660206|gb|CK048886.1|CK048886
genomic: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATGgtattggctt ... atctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGT
EST: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATG CAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTEST: gi|86595664|gb|CI288357.1|CI288357
genomic: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATGgtattggctt ... atctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGT
EST: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATG CAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTEST: gi|58590928|gb|CF989236.1|CF989236
genomic: TGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATGgtattggctt ... atctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGT
EST: CCTCTCTCTAGCTTTATG CAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTGTCCGACCTTTGCEST: gi|58676022|gb|CK064709.1|CK064709
genomic: CCTCTCTCTAGCTTTATGgtattggctt ... atctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACT-TCC-ACCTTTGC
EST: AAAACATTTCCCCTCTCTCTAGCTTTATG CAAGGAAATATCCCGAATGGACTA-TGCCAGCAGCACTTCCACCTTTGCGT
genomic: AAAACATTTCCCCTCTCTCTAGCTTTATGgtattggctt ... atctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGT
accattaacacctatcttttcttcactgagaagcttattttacttatctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTGACTTTGATCCTGCTTTCTCATTATTACTTACTAACCCACCATTGGCTA
cattaac putative branch site (score: 46)
ttttacttatcttt putative PPT
ttattttacttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatctgtgggcgcatttctgtttcactgttgatgatatattataaccattaacacctatcttttcttcactgagaagcttattttacttatctttgcagCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTGACTTTGATCCTGCTTTCTCATTATTACTTACTAACCCACCATTGGCTA
- - - - - - - - - -tgtttca
- - - - - - - - - - - - - - gttgatg