1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttggggtgcatatttgggtagaatgaagcagtttcatgaaatcatcttatttgcattgctttagtgggatatatttttgtaacatgtttggcaactgcagGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAG
species | Oryza sativa |
transcript | LOC_Os05g49220.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAG GATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGEST: gi|29684891|gb|CB681166.1|CB681166
genomic: TTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGgtaaaaaaaa ... gcaactgcagGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAG
EST: TTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAG GATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGEST: gi|29619052|gb|CB624064.1|CB624064
genomic: TTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGgtaaaaaaaa ... gcaactgcagGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAG
EST: TTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAG GATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAG
genomic: TTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGgtaaaaaaaa ... gcaactgcagGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAG
cttatttgcattgctttagtgggatatatttttgtaacatgtttggcaactgcagGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAG
ttgtaac putative branch site (score: 2)
atatatttttgtaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggggtgcatatttgggtagaatgaagcagtttcatgaaatcatcttatttgcattgctttagtgggatatatttttgtaacatgtttggcaactgcagGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -gtgcata
- - - - - - - - - - - -tgaagca
- - - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatgt