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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttttcatttgaaccttcctatttcatgctctggtttttgttattattgtagttattatcattgttattaccccatcatatttgacggtttgatatacatataggagACATTATTTGACGAATTTGTGGTTGCCCATATTTTGGGTTGGTGGGGTAAAGCCGTAATGATACGAAACCAGCTTCTTCTTTGGGTCCTCTCGATTGGTT

Basic information

species Oryza sativa
transcript LOC_Os05g48060.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g48060.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G131994_T01 (Zea mays), 3'ss of exon 5
gtatgatttttc--atttgaaccttcctatttcatgctctggtttttgttattattgtagttattatcattgttattaccccatcatatttg-acggtttgatatacatataggagACATTATTTGACGAATTTGTGGTTGCCCATATTTTGGGTTGGTGGGGTAAAGCCGTAATGATACGAAACCAGCTTCTTCTTTGGGTCCTCTCGATTGGTT
|||||||||||    | |||||||||||| |  |||     |    || |                         || | | || | || |  || || |||| ||  | ||||||||||| ||||| |||||||| |||||||||||  | || ||||  || ||||| || ||||||||||| || ||||| ||||||||| | ||||| |   
gtatgattttttttgtatgaaccttcctactctatgaagacgcacatgct-------------------------ttgctctattaaatctatactgtctgatctatgtgtagGAGACATTGTTTGATGAATTTGTTGTTGCCCATATCCTTGGGTGGTTTGGCAAAGCTGTGATGATACGAAATCAACTTCTACTTTGGGTCTTGTCGATCG---

upper sequence: LOC_Os05g48060.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G477340_T01 (Zea mays), 3'ss of exon 7
gtatgatttttc-atttgaaccttcctatttcatgctctggtttttgttattattgtagttattatcattgttattaccccatcatattt-gacggtttgatatacatataggagACATTATTTGACGAATTTGTGGTTGCCCATATTTTGGGTTGGTGGGGTAAAGCCGTAATGATACGAAACCAGCTTCTTCTTTGGGTCCTCTCGATTGGTT
||||||||||||  | |||||||||||| |  |||     |    ||       | |  || | ||||||| |||| | | || | || | ||| || |||| ||  | ||||||||||| ||||| |||||||| |||||||||||  | || ||||  || ||||| || ||||||||||| || ||||| ||||||||  | ||||| |   
gtatgatttttctgtatgaaccttcctactctatgaagacgcacatgc------tctgcttctcatcattgctattgctctattaaatctagactgtctgatctatgtgtagGAGACATTGTTTGATGAATTTGTTGTTGCCCATATCCTTGGGTGGTTTGGCAAAGCTGTGATGATACGAAATCAACTTCTACTTTGGGTATTGTCGATCG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattatcattgttattaccccatcatatttgacggtttgatatacatataggagACATTATTTGACGAATTTGTGGTTGCCCATATTTTGGGTTGGTGGGGTAAAGCCGTAATGATACGAAACCAGCTTCTTCTTTGGGTCCTCTCGATTGGTT
                                    tttgatatacatata  TA-rich tract