Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacctagcactaacttcccttggcatgcttggttgattgcttgagttaaatacttattcgcttctcctcgtgaactgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTCTTGGTATTGCGGCTTATCTTTACAA

Basic information

species Oryza sativa
transcript LOC_Os05g48020.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g48020.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G057251_T01 (Zea mays), 3'ss of exon 7
gtaaca-cctagcactaacttccc---ttggcatgct--tggttgattgcttgagttaaatact--tattcgcttctcctcgtgaactgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTCTTGGTATTGCGGCTTATCTTTACAA
|||| | | |||||||  | | |     | ||   ||  || |||| |  ||  || |  |  |   ||| | || ||    |||  ||||| ||||| ||||| ||||||||||| ||||| || ||| |||| || ||||| ||||||||||||||||| || ||||||||
gtaagaacttagcacttccgttctacacttgctaactaatgcttgagtagtttggtgacctcgtaccatttgtttttcacattgacttgttaccagCTTAGATCAAGTCGCAACTTTTGCATCGACATCATCCTTCTGTGTGTCATTCTTGGTATTGCGGCCTACCTTTACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86513085|gb|CI155718.1|CI155718
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|89177456|gb|CI390635.1|CI390635
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|27548352|gb|CA767492.2|CA767492
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88459478|gb|CI519539.1|CI519539
EST:     TAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: TAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88271549|gb|CI387602.1|CI387602
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88962991|gb|CI025477.1|CI025477
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|29656422|gb|CB652697.1|CB652697
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|33802714|gb|CF327228.1|CF327228
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|86537000|gb|CI177206.1|CI177206
EST:     ACACAGATTTGAAGAATACCTACGTCAGATTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|86539748|gb|CI179954.1|CI179954
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|33804306|gb|CF328027.1|CF328027
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88561103|gb|CI491820.1|CI491820
EST:     GATTTGAAGGATACCAACGTCAGACTGAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: GATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88459295|gb|CI516973.1|CI516973
EST:     ACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|86842355|gb|CI335259.1|CI335259
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88374342|gb|CI513429.1|CI513429
EST:     GAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: GAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88537361|gb|CI465192.1|CI465192
EST:     AAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: AAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|8858653|gb|AU095971.1|AU095971
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88561318|gb|CI492035.1|CI492035
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88378248|gb|CI503814.1|CI503814
EST:     CGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: CGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|89181470|gb|CI112976.1|CI112976
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88378282|gb|CI503848.1|CI503848
EST:     ACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTGTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|86870133|gb|CI318049.1|CI318049
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTCCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|86869693|gb|CI322179.1|CI322179
EST:     ACACAGATGGGAAGAATACCAACGTCAGACTAAAAGAGACCCTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCA-TGATATCGTCCTGCTCTCTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88206035|gb|CI205884.1|CI205884
EST:     ACACAGATTTGAAGAATACCTACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|86869435|gb|CI346295.1|CI346295
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88561863|gb|CI492580.1|CI492580
EST:     TACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: TACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88482256|gb|CI419527.1|CI419527
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88544436|gb|CI472534.1|CI472534
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88292423|gb|CI500371.1|CI500371
EST:     CCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: CCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88836744|gb|CI014745.1|CI014745
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88561242|gb|CI491959.1|CI491959
EST:     AGAATACCAACGTCAGACTGAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: AGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|58684769|gb|CK073456.1|CK073456
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88263973|gb|CI367747.1|CI367747
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|14192124|gb|AU184335.1|AU184335
EST:     TACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: TACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88270055|gb|CI381353.1|CI381353
EST:     ATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88538916|gb|CI467982.1|CI467982
EST:     ACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|3761646|gb|C98894.1|C98894
EST:     CCAACGTCANGACTAAAAGGGACCGTTCTTCAG                         CTGGAGATCTANTCGCAACTTCTGCCNTGATATCGTCCTGCTCTGTGTTAT
genomic: CCAACGTCA-GACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCT-GAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
EST: gi|88255735|gb|CI354559.1|CI354559
EST:     ACACAGATTT-AAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCA-TGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88323794|gb|CI558815.1|CI558815
EST:     GAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: GAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88524806|gb|CI453755.1|CI453755
EST:     ACACAGATTTGAAGAATACCNACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|86890189|gb|CI321366.1|CI321366
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTA-GTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
EST: gi|88273611|gb|CI394017.1|CI394017
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: gi|88275097|gb|CI395701.1|CI395701
EST:     ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCA-Ggtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
EST: gi|88462795|gb|CI519707.1|CI519707
EST:     AGACCGTTCTTCAG                         CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: AGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 63 (upstream exon), 70 (downstream exon)
Score: 204

GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTCTTGGTATTGCGGCTTATCTTTACAA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgattgcttgagttaaatacttattcgcttctcctcgtgaactgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTCTTGGTATTGCGGCTTATCTTTACAA
 ggttgat  putative branch site (score: 204)
              agttaaatacttatt  TA-rich tract