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gtgattatgtcccataatgtctcagcttcttttgaatatggcaatggtaaattggtttagtactaaccagtgtctcatgtatgcagAATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTATCAATGCTTGTTCTGAACAAGCATCGTGCTGGATTAAAG
species | Oryza sativa |
transcript | LOC_Os05g46290.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAG AATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTAEST: gi|33793593|gb|CF322681.1|CF322681
genomic: AAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAGgtgattatgt ... atgtatgcagAATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTA
EST: AAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAG AATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTAEST: gi|58675869|gb|CK064556.1|CK064556
genomic: AAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAGgtgattatgt ... atgtatgcagAATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTA
EST: AAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAG AATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTA
genomic: AAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAGgtgattatgt ... atgtatgcagAATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTA
ttgaatatggcaatggtaaattggtttagtactaaccagtgtctcatgtatgcagAATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTATCAATGCTTGTTCTGAACAAGCATCGTGCTGGATTAAAG
tactaac putative branch site (score: 17)
taaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattatgtcccataatgtctcagcttcttttgaatatggcaatggtaaattggtttagtactaaccagtgtctcatgtatgcagAATCGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTATCAATGCTTGTTCTGAACAAGCATCGTGCTGGATTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA