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gtgagtactctaacaatgtagttgaatgtttagccatttatttaggcaataccaggttttttttgggtatcatgttagctctaatgttatatatataattctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAACTAATGGGAGCACTGTATATGGGAAATAAACCTGTCCTCAAAGTTGACA
species | Oryza sativa |
transcript | LOC_Os05g45960.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCG GTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAAEST: gi|33795723|gb|CF323731.1|CF323731
genomic: GCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCGgtgagtactc ... ttctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAA
EST: CAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCCG GTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAEST: gi|44673793|gb|CR287227.1|CR287227
genomic: CAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCC-Ggtgagtactc ... ttctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCA
EST: CATATGG-CCGG GTTGC-ATTATCACACCATTCAATTTCCCATTGGAGA-TCCATTACTGCAEST: gi|58685594|gb|CK074281.1|CK074281
genomic: CATATGGTCC-Ggtgagtactc ... ttctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCA
EST: GCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCG GTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAAEST: gi|58676256|gb|CK064943.1|CK064943
genomic: GCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCGgtgagtactc ... ttctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAA
EST: GCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCG GTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAA
genomic: GCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCGgtgagtactc ... ttctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAA
aggttttttttgggtatcatgttagctctaatgttatatatataattctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAACTAATGGGAGCACTGTATATGGGAAATAAACCTGTCCTCAAAGTTGACA
ctctaat putative branch site (score: 25)
taatgttatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtactctaacaatgtagttgaatgtttagccatttatttaggcaataccaggttttttttgggtatcatgttagctctaatgttatatatataattctgaacagGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAACTAATGGGAGCACTGTATATGGGAAATAAACCTGTCCTCAAAGTTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA