Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaccactgtggtacaaccgtacaagtgctatgtatgctgtttgctgaaagaatgtgataatagatcctattcatcaatgcattgcagtagcatacggtatatctatttaaatattattttatcgttacctcattgttttcatattggtggcagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACAATAGATAATGACATAGCG

Basic information

species Oryza sativa
transcript LOC_Os05g44922.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g44922.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G004932_T01 (Zea mays), 3'ss of exon 7
gtaatttaccactgtggtacaaccgtacaagtgctatgtatgctgtttgctgaaagaatgtgataatagatcctattcatcaatgcattgcagtagcatacggtatatctatttaaatattattt------tatcgttacctcattgttttcatattggtggcagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACAATAGATAATGACATAGCG
                                                                || |    |||   ||   | || |  |       |  ||  |  | |  | |||||||||      | |   ||  ||||   || || |||  |||||||||||||| || ||||| || || ||||||||||||||  |||| |||||||||||||||||||| |||
----------------------------------------------------------------aacatggtctacctatatgttcagtagaagcaggaatagt-cagttttgaagatattatttaccctatttgactatttcatcacttacaaattattggcagGAAATCCGGAAGCGTGGCCTCAAAGTTTCTGTTGCTGGAGTTCCAAAGACAATAGATAATGACATTGCG

upper sequence: LOC_Os05g44922.2 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 7
---------------gtaatttaccactgtgg--tacaaccgtacaagtgctatgtatg------ctgtttgctgaaagaatgtgataatagatcctattcatcaatgcattgcagtagcatacggtatatctatttaaatattattttatcgtt--acctcattgttttcat-attggtgg--cagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACAATAGATAATGACATAGCG
                 | |  |  |  ||     | |     | || ||||   |||       |   || ||       |||  | | | |||||  |  |     |||| |      |  |  | | |    | ||||  |||  | | | |  |||  ||||   | ||  ||  | |  |||||||| | ||  ||||| ||||| ||| | |||||||| |||||||| ||||| |||||||||||  ||
gtaattttatttgtaaaactggaatatcgtaagtcatagtttgagaaatgctgcatataaatttaccagttcctttttctctgttctcagaaatcctgctgtttgtgacatttcc----taagctatttttgggctaaaatgatatgctgtagctgaaccctattgaactgattgttaattgtgcagGAAATTCAAAGGCGTGGTCTAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|569752|gb|D40601.1|D40601
EST:     ATATCATTGGAGGAGATGGAACACAGAAGGGTGCATATGAGATCTTCAAG                         GAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACA
genomic: ATATCATTGGAGGAGATGGAACACAGAAGGGTGCATATGAGATCTTCAAGgtaatttacc ... ttggtggcagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACA
EST: gi|571842|gb|D41353.1|D41353
EST:     TATCATTGGAGGAGATGGAACACAGAAGGGTGCATATTGAGATCTTCAAG                         GAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACA
genomic: TATCATTGGAGGAGATGGAACACAGAAGGGTGCATAT-GAGATCTTCAAGgtaatttacc ... ttggtggcagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctatttaaatattattttatcgttacctcattgttttcatattggtggcagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACAATAGATAATGACATAGCG
     tatttaaatattattt  TA-rich tract