Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatcatactatcttcactaattttccatcaacttcgagatttaagggttgacattatgagctaacccaatttcccactctactctaataattggtgcagGATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTGATTGTTGTGTTGTCTGGTACCATTTTGTTACATGTGACGAAGGATTATG

Basic information

species Oryza sativa
transcript LOC_Os05g43790.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g43790.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G120175_T01 (Zea mays), 3'ss of exon 1
-------------------------------------------------------------------------------------------aaatcatactatcttcactaattttccatcaacttcgagatttaagggttgacattatgagctaacccaatt-tcccactctactctaataattggtgcagGATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTGATTGTTGTGTTGTCTGGTACCATTTTGTTACATGTGACGAAGGATTATG
                                                                                              ||||| | |  | | |  |||   ||  | | |     |  ||  || |  | |  |        | |  | |||  ||  |  |||  ||| || ||||||||||||||||||||| ||||||| | | ||||||||| |||||  || |||| ||||||||||||||||||||||| |||||||||||||||||||
gtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgt-atttgtttcatatgcattcctcagctctagtatt-atttgacaaaaccgtaaactgatgccatgctgtttaaatgtttg-tgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTGGTTGTGGTGTTGTCTGGTACCATTTTGTTGCATGTGACGAAGGATTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218503663|gb|FG954349.1|FG954349
EST:     ATGTAATGTTCACAACACTAACAATACTTGCAACCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTG
genomic: ATGTAATGTTCACAACACTAACAATACTTGCAAGCGTCATAATGTTCAAGgtaatataag ... attggtgcagGATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTG
EST: gi|33662767|gb|CF293734.1|CF293734
EST:     ATGTAATGTTCACAACACTAACAATACTTGCAAGCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTG
genomic: ATGTAATGTTCACAACACTAACAATACTTGCAAGCGTCATAATGTTCAAGgtaatataag ... attggtgcagGATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggttgacattatgagctaacccaatttcccactctactctaataattggtgcagGATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTGATTGTTGTGTTGTCTGGTACCATTTTGTTACATGTGACGAAGGATTATG
                                      tctaataatt  TA-rich tract