1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaacatgattcaatggcttccatttctcttctgtgctattgcttacatcattcaatggctctaatatttgtatatttctctctttttttggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAATCGCTGAGGGAGCATCTCATTCAAGCCCTGCGGTCATATTACCAGGAC
species | Oryza sativa |
transcript | LOC_Os05g43480.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|87016218|gb|CI271629.1|CI271629
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|86858242|gb|CI271127.1|CI271127
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTACCAAATACAGGCACGCCTCAAGGTAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|86482455|gb|CI125088.1|CI125088
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|88224058|gb|CI223907.1|CI223907
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|86493022|gb|CI135655.1|CI135655
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|66924296|gb|CX111144.1|CX111144
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|87014047|gb|CI273237.1|CI273237
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAEST: gi|16754303|gb|BM038682.1|BM038682
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCGTCTAC-AAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAGAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGEST: gi|109713069|gb|CI105677.1|CI105677
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAA-AGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAG
EST: CAAGATAGTGACACAATGAG AAAGGAGCTGATAAGCGAATCTGGAAGAATA-TTAGGTCAAAAATTCCAGAEST: gi|88270288|gb|CI385546.1|CI385546
genomic: CAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
EST: AGACGCCCTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAG AAAGGAGCTGATAATCGAATCTGGAAGAATATTTAGCTCAAAAATTCCAGA
genomic: AGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGgtactttgat ... ggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGA
acatcattcaatggctctaatatttgtatatttctctctttttttggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAATCGCTGAGGGAGCATCTCATTCAAGCCCTGCGGTCATATTACCAGGAC
tatttctctctttttt CT-rich tract
taatatttgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacatgattcaatggcttccatttctcttctgtgctattgcttacatcattcaatggctctaatatttgtatatttctctctttttttggcaatgcagAAAGGAGCTGATAAGCGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAATCGCTGAGGGAGCATCTCATTCAAGCCCTGCGGTCATATTACCAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - tgattca
- - - - - - - - gcttcca
- - - - - - - - - - - - - - - -ctgtgct
- - - - - - - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - -cattcaa