1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agatgaacttttccgctaaaggtggaattgcagtagctgaatatagtatagatgttgcttttcatcagcattatctcacctatcttttgcataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAGCTGCATGATGGACTGCTTTCGCTGAACAAGTTGATAACAATTCTGACC
species | Oryza sativa |
transcript | LOC_Os05g42350.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|88544519|gb|CI472623.1|CI472623
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|10794927|gb|AU108893.1|AU108893
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACATATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|58691385|gb|CK080072.1|CK080072
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|29621655|gb|CB626666.1|CB626666
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|58694341|gb|CK083028.1|CK083028
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|5002798|gb|AU067907.1|AU067907
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: AGCACACGTCAGGAAGGTGAATCTTNTTGGTAGCTTCACACGCCGGAACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCEST: gi|2311250|gb|C27405.1|C27405
genomic: AGCACACGTCAGGAAGGTGAATCTT-TTGGTAGCTTCACACGCCGGA-CGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATC
EST: ACAGCACACGTCAGGAAGGTGAATCTNTTGGTAGCTTCACACGCCGGACG GGATTTGACATATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|58694439|gb|CK083126.1|CK083126
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|88216162|gb|CI216011.1|CI216011
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|86495058|gb|CI137691.1|CI137691
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|89176027|gb|CI043048.1|CI043048
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|88214761|gb|CI214610.1|CI214610
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCTCACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAEST: gi|29625861|gb|CB630872.1|CB630872
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
EST: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACG GGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
genomic: ACAGCACACGTCAGGAAGGTGAATCTTTTGGTAGCTTCACACGCCGGACGgtgagtaatc ... ataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCA
gtatagatgttgcttttcatcagcattatctcacctatcttttgcataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAGCTGCATGATGGACTGCTTTCGCTGAACAAGTTGATAACAATTCTGACC
atctcac putative branch site (score: 16)
tatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgaacttttccgctaaaggtggaattgcagtagctgaatatagtatagatgttgcttttcatcagcattatctcacctatcttttgcataaaaccagGGATTTGACAAATTGAAAGAGGTAGTGAACAAGTGGGCAGAGTCAGCATCAGCTGCATGATGGACTGCTTTCGCTGAACAAGTTGATAACAATTCTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-gatgaac
- - - - - ttccgct
- - - - - - - - - - - - - - tgcagta
- - - - - - - - - - - - - - - - - -gctgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcagc