1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aacaaagaaaagtagctaacaatgatcaacaatactgttactttatgtactgtaataaaatttgtttaccatgttctaatgtttcctttgttcttctcagTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAG
species | Oryza sativa |
transcript | LOC_Os05g38710.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTCATTGTACCGGGAAG TTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAGEST: gi|86595618|gb|CI272594.1|CI272594
genomic: CGTCATTGTACCGGGAAGgtaacatcat ... ttcttctcagTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAG
EST: ACCTGTTGTGATTTCACCTGATGGTTTATTTCCGTCATTGTACCGGGAAG TTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAG
genomic: ACCTGTTGTGATTTCACCTGATGGTTTATTTCCGTCATTGTACCGGGAAGgtaacatcat ... ttcttctcagTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAG
tgtactgtaataaaatttgtttaccatgttctaatgtttcctttgttcttctcagTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAG
ttctaat putative branch site (score: 20)
tgtttcctttgttctt CT-rich tract
tgtaataaaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaaagaaaagtagctaacaatgatcaacaatactgttactttatgtactgtaataaaatttgtttaccatgttctaatgtttcctttgttcttctcagTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - aagaaaa
- - - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc