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...ttttttagtatgtactgttgcccgtagagcttcttgtcaacgttattcactgttgtattttttttaaacattattcactgttgtatccccttttgttcagTGTGGACAAGGGAACACGGATGATATTTTAAGCCCAACGTGTGTTTCGGCTATTATGGGAGTGAAGATACAACGTGTAGCAGCTGGGCTATGGCATACTG
species | Oryza sativa |
transcript | LOC_Os05g38270.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGGAACACTTCTTACATTTGGATGGGGATTATATGGACAG TGTGGACAAGGGAACACGGATGATATTTTAAGCCCAACGTGTGTTTCGGCTEST: gi|29665759|gb|CB662034.1|CB662034
genomic: ATTCAGGAACACTTCTTACATTTGGATGGGGATTATATGGACAGgtttgtttta ... ttttgttcagTGTGGACAAGGGAACACGGATGATATTTTAAGCCCAACGTGTGTTTCGGCT
EST: ATTCAGGAACACTTCTTACATTTGGATGGGGATTATATGGACAG TGTGGACAAGGGAACACGGATGATATTTTAAGCCCAACGTGTGTTTCGGCT
genomic: ATTCAGGAACACTTCTTACATTTGGATGGGGATTATATGGACAGgtttgtttta ... ttttgttcagTGTGGACAAGGGAACACGGATGATATTTTAAGCCCAACGTGTGTTTCGGCT
ttcactgttgtattttttttaaacattattcactgttgtatccccttttgttcagTGTGGACAAGGGAACACGGATGATATTTTAAGCCCAACGTGTGTTTCGGCTATTATGGGAGTGAAGATACAACGTGTAGCAGCTGGGCTATGGCATACTG
tatccccttttgttc CT-rich tract
tgttgtatttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttagtatgtactgttgcccgtagagcttcttgtcaacgttattcactgttgtattttttttaaacattattcactgttgtatccccttttgttcagTGTGGACAAGGGAACACGGATGATATTTTAAGCCCAACGTGTGTTTCGGCTATTATGGGAGTGAAGATACAACGTGTAGCAGCTGGGCTATGGCATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG