1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgatcttattgctatttttgagatataatgttaatatgcatgagtaaattaattacggtatgaaagtttcgtagatatgttttttttcccaccaacttgtagagaaacctgaatccctgattctctttgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
species | Oryza sativa |
transcript | LOC_Os05g36070.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCATTGGCTAGCAAACAACATTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGEST: gi|29623970|gb|CB628981.1|CB628981
genomic: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
EST: GAAGCATTGGCTAGNCAA-CAACATTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTTGGATCATTEST: gi|29623040|gb|CB628051.1|CB628051
genomic: GAAGCATTGGCTAG-CAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATT
EST: AGAAGCATTGGCTAGCAAACAACATTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGEST: gi|29623889|gb|CB628900.1|CB628900
genomic: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
EST: AGAAGCATTGGCTAGCAAACAACATTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTGGGATCATTCEST: gi|87005300|gb|CI285522.1|CI285522
genomic: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATTC
EST: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGEST: gi|29623038|gb|CB628049.1|CB628049
genomic: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
EST: AGAAGCATTGGCTAGCAAACAACATTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGEST: gi|29628338|gb|CB633349.1|CB633349
genomic: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
EST: AGAAGCATTGGCTAGCAAACAACATTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGEST: gi|29628337|gb|CB633348.1|CB633348
genomic: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
EST: AGAAGCATTGGCTAGCAAACAACATTCTGGGGATTTCTTTCTGCATTCAG GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
genomic: AGAAGCATTGGCTAGCAAACAACGTTCTGGGGATTTCTTTCTGCATTCAGgtttgatctt ... tgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
tttttcccaccaacttgtagagaaacctgaatccctgattctctttgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
ccctgat putative branch site (score: 4)
tccctgattctcttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatcttattgctatttttgagatataatgttaatatgcatgagtaaattaattacggtatgaaagtttcgtagatatgttttttttcccaccaacttgtagagaaacctgaatccctgattctctttgccatccagGGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG