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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaataatatcctcttctagtgtttcatttcacaccaatacttcttaattgttttcttacatctatccgtaatattttgttatatcaatcaatattgcagGTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTATGACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACT

Basic information

species Oryza sativa
transcript LOC_Os05g35730.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g35730.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G011169_T01 (Zea mays), 3'ss of exon 7
------caaataatatcctcttctagtgtttca-tttcacaccaatacttcttaattgttttcttacatctatccgtaatattttgttatatcaatcaatattgcagGTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTATGACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACT
      ||||| || |  |||||||    |||| |||| || |  |||  |||  || ||       ||  ||   || | |||| | |  ||| | |    |||||||||||| || |||||||   |||||||||||||| ||||||||||||| ||| ||||| |||||||| ||||||||||| |||||
aaattacaaatgatgt--tcttctatcacttcaatttcgcaacgctaca-cttggttattactgattatacatgtatattgttttatcacttcattta----tgcagGTGACCAGCAAATTTATTTCACGCAAGCTTGTGCAGCGATGTTATGACAGAGCCCTTGCGATTGGTCTAAAAGGATATGCGAAACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattgttttcttacatctatccgtaatattttgttatatcaatcaatattgcagGTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTATGACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACT
        ttcttac  putative branch site (score: 2)
                        taatattttgttatat  TA-rich tract