1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcaggttttagtaagttccacaaatgccagttagtttaagtccatttactagaacaaaaatttgagaatatgttttatggtttccagGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATG
species | Oryza sativa |
transcript | LOC_Os05g35570.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAG GATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTEST: gi|58601636|gb|CK012164.1|CK012164
genomic: ATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGgtatgcaggt ... tggtttccagGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTT
EST: ATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAG GATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTEST: gi|88223419|gb|CI223268.1|CI223268
genomic: ATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGgtatgcaggt ... tggtttccagGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTT
EST: TGCGATG-TTAGCATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAG GATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTEST: gi|27546153|gb|CA767191.2|CA767191
genomic: TGCGATGTTTA-CATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGgtatgcaggt ... tggtttccagGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTT
EST: ATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAG GATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTT
genomic: ATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGgtatgcaggt ... tggtttccagGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTT
agtttaagtccatttactagaacaaaaatttgagaatatgttttatggtttccagGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATG
tttcc CT-rich tract
aaaaatttgagaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaggttttagtaagttccacaaatgccagttagtttaagtccatttactagaacaaaaatttgagaatatgttttatggtttccagGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA