1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgcttttgaactttcttgatgctcttataattaaatcattctgataaaagttattggttaaccaatcaaatattatatgtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAGTTGATTCCTTCATTAAGAGCG
species | Oryza sativa |
transcript | LOC_Os05g34650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|33381296|gb|CF196639.1|CF196639
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|33666778|gb|CF297745.1|CF297745
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|117223389|gb|CT846265.1|CT846265
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|58666538|gb|CK055224.1|CK055224
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|58684548|gb|CK073235.1|CK073235
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|29645586|gb|CB650593.1|CB650593
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|58675486|gb|CK064173.1|CK064173
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAEST: gi|58674742|gb|CK063429.1|CK063429
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
EST: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAG GTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
genomic: CTTCATTTGCCTTCTTGTCTTGTGGCTATCTCCTTAGTTCATACCATGAGgtttgctttt ... gtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCA
aatcattctgataaaagttattggttaaccaatcaaatattatatgtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAGTTGATTCCTTCATTAAGAGCG
ggttaac putative branch site (score: 50)
tattctc putative PPT
aatcaaatattatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcttttgaactttcttgatgctcttataattaaatcattctgataaaagttattggttaaccaatcaaatattatatgtattctcagGTGAGATCTGTTGTGCTGAACACTCTAAACACGGCAAGATTTACTGTGGCAGTTGATTCCTTCATTAAGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA