1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgacttcatttataacattctgaggtctatcagaaaagagtatgatttctctttgatgcatagcattgttgatttgatttaatgctccaacattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGATGGGTGGTCATGCTGTCAAGTTGATTGGATGGGGAACCACGGATGCTG
species | Oryza sativa |
transcript | LOC_Os05g24550.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86528550|gb|CI168756.1|CI168756
genomic: TGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACAGTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|38469357|gb|CF953488.1|CF953488
genomic: ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|29689542|gb|CB685817.1|CB685817
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86431204|gb|CI083627.1|CI083627
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86537269|gb|CI177475.1|CI177475
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86869490|gb|CI346350.1|CI346350
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: TTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|94362581|gb|CI052700.1|CI052700
genomic: TTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86853597|gb|CI330448.1|CI330448
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: GTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|87022144|gb|CI259216.1|CI259216
genomic: GTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86535655|gb|CI175861.1|CI175861
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: AGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86878292|gb|CI319571.1|CI319571
genomic: AGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: TGCTTTCACCGTTTATGA- GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86433995|gb|CI094338.1|CI094338
genomic: TGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|88216143|gb|CI215992.1|CI215992
genomic: CCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|88833829|gb|CI077310.1|CI077310
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86870930|gb|CI326751.1|CI326751
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|33656188|gb|CF278802.1|CF278802
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|29666315|gb|CB662590.1|CB662590
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|89193799|gb|CI018117.1|CI018117
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCGAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|29680417|gb|CB676692.1|CB676692
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|29658207|gb|CB654482.1|CB654482
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86540276|gb|CI180482.1|CI180482
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86887633|gb|CI311916.1|CI311916
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|58031395|gb|CX728938.1|CX728938
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|88250173|gb|CI250450.1|CI250450
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86427759|gb|CI072856.1|CI072856
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86843379|gb|CI341454.1|CI341454
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: TTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|89198824|gb|CI003561.1|CI003561
genomic: TTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAACCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|29686790|gb|CB683065.1|CB683065
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86430781|gb|CI083204.1|CI083204
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|88987851|gb|CI017940.1|CI017940
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86251465|gb|CI055598.1|CI055598
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86528070|gb|CI168276.1|CI168276
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCCAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|29639549|gb|CB644558.1|CB644558
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86884529|gb|CI337097.1|CI337097
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: TCACCGTTTATGAG GATTTTCCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|58609130|gb|CK037163.1|CK037163
genomic: TCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86528093|gb|CI168299.1|CI168299
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|88986013|gb|CI033342.1|CI033342
genomic: ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|33654657|gb|CF277271.1|CF277271
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|58610249|gb|CK038121.1|CK038121
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|86428106|gb|CI073203.1|CI073203
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|18388303|gb|BM421501.1|BM421501
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: GGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|88830222|gb|CI076478.1|CI076478
genomic: GGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: GTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGEST: gi|88966702|gb|CI365925.1|CI365925
genomic: GTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: CAGAGGTCTACCAAAATGGCCCTCTAGAAGTTGCTTTCACCGTTTATGAG GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
tttctctttgatgcatagcattgttgatttgatttaatgctccaacattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGATGGGTGGTCATGCTGTCAAGTTGATTGGATGGGGAACCACGGATGCTG
atttaat putative branch site (score: 4)
ttgatttgatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacttcatttataacattctgaggtctatcagaaaagagtatgatttctctttgatgcatagcattgttgatttgatttaatgctccaacattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATGATGGGTGGTCATGCTGTCAAGTTGATTGGATGGGGAACCACGGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG