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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctaatgcgttgttgggctcttacagttgtgacatgttgggttagcattaagggcctaagcatgattgttgtcatcctctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG

Basic information

species Oryza sativa
transcript LOC_Os05g23620.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G158479_T02 (Zea mays), 3'ss of exon 6
gtaagtttctaatgcgttgttgggctcttacagttgtgacatgttgggttagcattaagggcctaagcatgattgttgtcatcctctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
||||  |   | ||   |||||   || |  | || |||  ||| |||         ||| |  |||  ||||   |   || | ||    |||||||| ||||||||||| || ||| | || ||||||||||| ||||||||||||||||| || |||
gtaaacta--actgtcatgttga-ttcctgtacttttgaattgtggggc--------aggactaaagtttgatcactcatattccct----cagATGGGTAAGGATGTCGTATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG

upper sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G032367_T03 (Zea mays), 3'ss of exon 6
gtaagtttctaatgc-gttgttgggctcttacagttgtgacatgttgggttagcattaagggcctaagcatgattgttgtcatcctctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
||||  |  || ||  ||||||   | ||   | || |||  ||| ||| ||| | |||       ||  |||    |   | | || | |||||||||| |||||||| || || ||| | |||||||||||||| ||||||||||||||||| || |||
gtaaactattactgttgttgtttatccct-gtacttttgaattgtggggctaggactaa-------agtttgaccacttata-cttccatcacagATGGGTAAGGATGTTGTATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG

upper sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA16G06700.2 (Glycine max), 3'ss of exon 6
gtaagtttctaatgcgttgttgggctcttacagttgtg-acatgtt----gggttagcatt--aagggcctaagcatgattgttgtcatcctctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
    || |  |||  | |  |||     ||  |||  | | || ||        | | |||  |  |     |||    ||  | | |   | |    |||||||| |||||||| || || |||||  | ||||| || ||||| |||||||||||||| ||||||
----gtattaaatttgcttctggaggaatatggtttagtaaatcttcttaaaaatgggatttgatagaatctagctcattttctcttaatgtttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTG

upper sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA19G24620.2 (Glycine max), 3'ss of exon 6
---gtaagttt-ctaatgcgttgttgggctcttacag-ttgtgacatgttgggttagcattaagggcctaagcatgattgttgtcatcctctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
    ||  |||  |  ||      |||  |  || |  || | |||  | |   | | |  ||  |    |||    ||  | | |   | |    |||||||| |||||||| || || |||||    ||||| || |||||||||||||||||||| ||||||
gtattatatttgtttctggaggaatggtttagtaaatcttcttacaaatagaaattggaaaaaatgt---agctcattttattttaatgtttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTG

upper sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 7
lower sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 6
-gtaagtttctaatgcgttgt---tgggctcttacagttgtgacatgttgggttagcattaagggcctaag-catgattgttgtcatcctctac--cacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
  ||  ||||     | |      |  |  | || | |  | |    ||  | ||   |       |   | ||||||        | || |||    |||||||| || ||| | || || |||||| | |||||||||||||| || ||||||||||||||||||
gttatttttcctccacttaaaatataagaacata-aatctttatgccttatggtactgtcctttctcagtgtcatgatataaactttactttacggtgcagATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTG

upper sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 7
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 3'ss of exon 5
--------------------gtaagtttctaatgcgttgttgggctcttacagttgtgacatgt----tgggttagcattaagggcctaagcatgattgttgtcatcctctacca--cagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
                    | || |   |         |   | | |  ||| | |||| | |    || || |    ||    | | |   |   | || | |      |  |  |||||||| || ||||| || || |||||||| |||||||||||||| |||||||||||||||||| ||
gttagttttcctctgcttaagaaaataatttgcagaccataaagttttatcagatttgacctttcctctgagtcaattatataatctttaatttttctttttttaaaaaacatgatgcagATGGGTAAAGATGTTGTATCCTTCTTGTCCTGGGCAGCTGAACCAGAGATGGAAGAGAGGAAATTG

upper sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtttctaa-tgcgttgttgggctctta--cagttgtgacatgt--tgggttagcattaagggcctaagcatgattgttgtcatcc-----tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
||  ||||  |  | |  |  | |   |||      || | |  |||  | |  |    || | ||  | || |   |   |||| |||     |||    |||||||| || ||||| || || || ||| |||||||||| ||||| ||||||||||| |||||||||
gtgggttttcatctactctaattgcaacttgggtgcttcttaactgtaattgcatctttttcaaggtgttagaaaattgagtgtcttccataattctggtgcagATGGGGAAAGATGTTGTATCATTTTTGACATGGGCAGCGGAACCAGAGATGGAAGAAAGGAAACTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88837919|gb|CI371497.1|CI371497
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88967733|gb|CI016248.1|CI016248
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88904094|gb|CI006327.1|CI006327
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|89188411|gb|CI115660.1|CI115660
EST:     GGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: GGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88957497|gb|CI011426.1|CI011426
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88846853|gb|CI005832.1|CI005832
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88273684|gb|CI394090.1|CI394090
EST:     TGGTACTCCTCCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTG-ACCTGAGAT-
genomic: TGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|29683088|gb|CB679363.1|CB679363
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCTTTTCGTTCTTGTCATGGGCAGCTGAACCTGATATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88261856|gb|CI365432.1|CI365432
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGAT-
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86839354|gb|CI331590.1|CI331590
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|27576587|gb|CA999281.1|CA999281
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86252063|gb|CI055800.1|CI055800
EST:     ATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: ATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86256131|gb|CI007847.1|CI007847
EST:     TCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|27547605|gb|CA765614.2|CA765614
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88458791|gb|CI558452.1|CI558452
EST:     AGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTCTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: AGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86250984|gb|CI013994.1|CI013994
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86261365|gb|CI014432.1|CI014432
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86870607|gb|CI323483.1|CI323483
EST:     TACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88291564|gb|CI537350.1|CI537350
EST:     GAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: GAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|16577691|gb|BI811786.1|BI811786
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|33684661|gb|CF312900.1|CF312900
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|87016165|gb|CI281908.1|CI281908
EST:     TGAATATGAAGATGGTACTCCTGCCATCTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TGAATATGAAGATGGTACTCCTGCCA-CTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|29655598|gb|CB651873.1|CB651873
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86413509|gb|CI019094.1|CI019094
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88984484|gb|CI015035.1|CI015035
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|55434054|gb|CV730143.1|CV730143
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86843094|gb|CI341293.1|CI341293
EST:     GTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: GTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86840359|gb|CI342554.1|CI342554
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88227610|gb|CI227090.1|CI227090
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|58682709|gb|CK071396.1|CK071396
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88221321|gb|CI221277.1|CI221277
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88252103|gb|CI350531.1|CI350531
EST:     TGTTGAATATGAAGAT-GTACTCCTGCCAACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTG-ACCTGAGATG
genomic: TGTTGAATATGAAGATGGTACTCCTGCC-ACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|87028970|gb|CI351273.1|CI351273
EST:     GATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: GATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88280719|gb|CI401917.1|CI401917
EST:     AGATGGAGCTNTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTNTCATGGGCAGCTGAACCTGAGATG
genomic: AGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88837485|gb|CI078845.1|CI078845
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|3768179|gb|AU032206.1|AU032206
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|87028987|gb|CI351290.1|CI351290
EST:     GTACTCCTGCCAGCTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGGCTGAACCTGAGAT
genomic: GTACTCCTGCCA-CTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCA-GCTGAACCTGAGAT
EST: gi|58030698|gb|CX728241.1|CX728241
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88413910|gb|CI530882.1|CI530882
EST:     GCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: GCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88279708|gb|CI400906.1|CI400906
EST:     CTGTTGAATATGAAGATGGTACTCCTNCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCANCTGAACCTGAGATG
genomic: CTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|89196432|gb|CI399018.1|CI399018
EST:     AATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGAATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: AATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|29659241|gb|CB655516.1|CB655516
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86836533|gb|CI348399.1|CI348399
EST:     CTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: CTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86522378|gb|CI162584.1|CI162584
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88259551|gb|CI363844.1|CI363844
EST:     CTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: CTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86841265|gb|CI342983.1|CI342983
EST:     GAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: GAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86491776|gb|CI134409.1|CI134409
EST:     TCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88844350|gb|CI005723.1|CI005723
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86537600|gb|CI177806.1|CI177806
EST:     TAGATGGAGCTGTAGAATATGAAGATGGTACTCCTGCCATTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88274443|gb|CI394849.1|CI394849
EST:     GAATATGAAGATGGTACTCCTGCCAGCTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: GAATATGAAGATGGTACTCCTGCCA-CTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86416090|gb|CI030101.1|CI030101
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTTTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88277713|gb|CI398515.1|CI398515
EST:     ATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATTTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: ATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88837960|gb|CI371538.1|CI371538
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86251283|gb|CI055416.1|CI055416
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86431236|gb|CI083659.1|CI083659
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88848948|gb|CI087470.1|CI087470
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|29670618|gb|CB666893.1|CB666893
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|5003486|gb|AU068635.1|AU068635
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGANCCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|29674160|gb|CB670435.1|CB670435
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86535105|gb|CI175311.1|CI175311
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|86834217|gb|CI343977.1|CI343977
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
EST: gi|88972105|gb|CI018553.1|CI018553
EST:     TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG                         ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG
genomic: TAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 46 (downstream exon)
Score: 1

TTACAATCCCTACTTCCCTGGTGGTGCCATAGCTATGCCCAAGATGCTTATAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAGgtaagtttct ... tctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttgggttagcattaagggcctaagcatgattgttgtcatcctctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG
                                       tcatcctct  CT-rich tract
              attaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttctaatgcgttgttgggctcttacagttgtgacatgttgggttagcattaagggcctaagcatgattgttgtcatcctctaccacagATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA