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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctagagatcttattaagaatgctcacacagagattttttttcttactttataaaggttgaatgtccctaactttttttctaaaataatgagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682357|gb|CB678632.1|CB678632
EST:     AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACAT                         TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCCAGAAAGTCTGTCTA
genomic: AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACATgtaagcttgt ... gagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCC-AGAAAGTCTGTCTA
EST: gi|29627199|gb|CB632210.1|CB632210
EST:     AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACAT                         TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
genomic: AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACATgtaagcttgt ... gagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
EST: gi|29680539|gb|CB676814.1|CB676814
EST:     AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACAT                         TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
genomic: AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACATgtaagcttgt ... gagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
EST: gi|29627859|gb|CB632870.1|CB632870
EST:     AAGAGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACAT                         TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
genomic: AAG-GGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACATgtaagcttgt ... gagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
EST: gi|29622647|gb|CB627658.1|CB627658
EST:     AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACAT                         TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
genomic: AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACATgtaagcttgt ... gagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
EST: gi|29624375|gb|CB629386.1|CB629386
EST:     AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACAT                         TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
genomic: AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACATgtaagcttgt ... gagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
EST: gi|29664573|gb|CB660848.1|CB660848
EST:     AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACAT                         TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA
genomic: AAAGGGAAAATACCTGCTTATTTGGGCACAATGACTAATTTGGAAGACATgtaagcttgt ... gagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttataaaggttgaatgtccctaactttttttctaaaataatgagcttgtagTGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT
                                 ttctaaa  putative branch site (score: 2)
                        taactttttttctaaa  TA-rich tract