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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgttttctcatttctgtgattcataggggcccttaatcttggaagtgtgagcttgatgcttttgccgttggcctaaccagttcttcaacttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCATCTCCTGTCATGTGGAAGAGACTAAGGTGCAGTGTTTAGCTACTGACAGT

Basic information

species Oryza sativa
transcript LOC_Os05g16660.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88436120|gb|CI516656.1|CI516656
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88243408|gb|CI244530.1|CI244530
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86499895|gb|CI142528.1|CI142528
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGCCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86487945|gb|CI130578.1|CI130578
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|38476674|gb|CF960807.1|CF960807
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86496419|gb|CI139052.1|CI139052
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88436059|gb|CI516595.1|CI516595
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86500620|gb|CI143253.1|CI143253
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88380233|gb|CI516220.1|CI516220
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTG-AACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86495231|gb|CI137864.1|CI137864
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88253886|gb|CI352512.1|CI352512
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACACTTTTGGTTGGGAAGATGTTTCA
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTAC-CTTTTGGTTGGGAAGATGTTTCA
EST: gi|88463857|gb|CI527184.1|CI527184
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|66915339|gb|CX102187.1|CX102187
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88419994|gb|CI516443.1|CI516443
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88321140|gb|CI532890.1|CI532890
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88303905|gb|CI512979.1|CI512979
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88380137|gb|CI516124.1|CI516124
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88471754|gb|CI409025.1|CI409025
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|87026422|gb|CI252376.1|CI252376
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88449484|gb|CI534043.1|CI534043
EST:     CTNACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86413445|gb|CI067850.1|CI067850
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86883640|gb|CI328698.1|CI328698
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86429193|gb|CI075874.1|CI075874
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88303884|gb|CI512958.1|CI512958
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86413607|gb|CI019192.1|CI019192
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCACTTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCA
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCA-TTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCA
EST: gi|88690738|gb|CI734817.1|CI734817
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88462799|gb|CI519711.1|CI519711
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86436419|gb|CI118141.1|CI118141
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88286046|gb|CI515170.1|CI515170
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88304266|gb|CI515539.1|CI515539
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88261439|gb|CI365015.1|CI365015
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88690154|gb|CI734233.1|CI734233
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88843443|gb|CI372343.1|CI372343
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88691326|gb|CI733910.1|CI733910
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86877402|gb|CI312766.1|CI312766
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86484664|gb|CI127297.1|CI127297
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86429713|gb|CI076394.1|CI076394
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88835916|gb|CI371021.1|CI371021
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88374230|gb|CI513317.1|CI513317
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86837852|gb|CI343257.1|CI343257
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88319498|gb|CI518342.1|CI518342
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88365969|gb|CI548216.1|CI548216
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86603949|gb|CI114723.1|CI114723
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88227540|gb|CI227020.1|CI227020
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86419526|gb|CI054327.1|CI054327
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86414963|gb|CI069366.1|CI069366
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|89169545|gb|CI109904.1|CI109904
EST:     CTGACTACTTCGACATCGAGATTGAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86496362|gb|CI138995.1|CI138995
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|88436960|gb|CI523910.1|CI523910
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86835727|gb|CI348184.1|CI348184
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
EST: gi|86858704|gb|CI274995.1|CI274995
EST:     CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG                         GCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT
genomic: CTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 70 (downstream exon)
Score: 47

CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAGgtaagatgtc ... ttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCATCTCCTGTCATGTGGAAGAGACTAAGGTGCAGTGTTTAGCTACTGACAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgagcttgatgcttttgccgttggcctaaccagttcttcaacttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCATCTCCTGTCATGTGGAAGAGACTAAGGTGCAGTGTTTAGCTACTGACAGT
                          gcctaac  putative branch site (score: 47)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccgttttctcatttctgtgattcataggggcccttaatcttggaagtgtgagcttgatgcttttgccgttggcctaaccagttcttcaacttgtatccagGCTGCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCATCTCCTGTCATGTGGAAGAGACTAAGGTGCAGTGTTTAGCTACTGACAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - -tgattca
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