1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tacctagctttagaagataacgaattgtttttaacctcatggtacattttgcgggttcttcgttattataaatgaactgattttttcgttattcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAAATTATTCTGTACTTGATCTTTACTGGTCTTCAAGGCTTCATTATTGAGC
species | Oryza sativa |
transcript | LOC_Os05g10810.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGTTATCAG CCAAGCTATCCCCGAACTTCCCGTGTTAAAAAAGGTTGGCTGATTCGTCAAEST: gi|29614064|gb|CB619077.1|CB619077
genomic: ACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAA
EST: CTTTAGGGAATCTAATATACTTCATGATGGCTCCAACACTCTGTTATCAG CCAAGCTATCCCCGAACTTCEST: gi|33796857|gb|CF324292.1|CF324292
genomic: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTC
EST: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAG CCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAAEST: gi|58685218|gb|CK073905.1|CK073905
genomic: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAA
EST: CTTTAGGGAATCTAATATACTTCATGATGGCTCCAACACTCTGTTATCAG CCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAAEST: gi|33795565|gb|CF323652.1|CF323652
genomic: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAA
EST: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAG CCAAGCTATCCCCGAACTTCATGTGTEST: gi|29646483|gb|CB651490.1|CB651490
genomic: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTCATGTGT
EST: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAG CCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAAEST: gi|29664324|gb|CB660599.1|CB660599
genomic: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAA
EST: TACACTCTGTTATCAG CCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAAEST: gi|33797472|gb|CF324596.1|CF324596
genomic: TACACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAA
EST: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAG CCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAA
genomic: CTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAGgtattttttg ... attcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAA
attttgcgggttcttcgttattataaatgaactgattttttcgttattcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAAATTATTCTGTACTTGATCTTTACTGGTCTTCAAGGCTTCATTATTGAGC
aactgat putative branch site (score: 15)
ttttttcgttattc CT-rich tract
ttattataaatgaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctagctttagaagataacgaattgtttttaacctcatggtacattttgcgggttcttcgttattataaatgaactgattttttcgttattcgtgcagCCAAGCTATCCCCGAACTTCATGTGTTAGAAAAGGTTGGCTGATTCGTCAAATTATTCTGTACTTGATCTTTACTGGTCTTCAAGGCTTCATTATTGAGC
- - - - - - gaagataa
- - - - - - - - - - - - - - - - - - - - - - -attttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaactg