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gttagtgtatttcttcccagccattctttataattgccttgttcaggttgtttcaatccccttttgcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
species | Oryza sativa |
transcript | LOC_Os05g08980.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGATGGAAGCCAAACAGEST: gi|29663313|gb|CB659588.1|CB659588
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGATGGAAGCCAAACAGEST: gi|2796279|gb|AA749573.1|AA749573
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGEST: gi|29674385|gb|CB670660.1|CB670660
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCG
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGATGGAAGCCAAACAGEST: gi|33684852|gb|CF313091.1|CF313091
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGATGGAAGCCAAACAGEST: gi|29671281|gb|CB667556.1|CB667556
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGATGGAAGCCAAACAGEST: gi|29688958|gb|CB685233.1|CB685233
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGATGGAAGCCAAACAGEST: gi|33684851|gb|CF313090.1|CF313090
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
EST: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTG GATGAAAAAATGGATTCGATGGAAGCCAAACAG
genomic: AGAATATTGGTTCAGAAATTAAGAACATCAAACAATTGGTTTGGGGTCTGgttagtgtat ... gcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
ccattctttataattgccttgttcaggttgtttcaatccccttttgcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
tttcaatccccttttg CT-rich tract
tttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtatttcttcccagccattctttataattgccttgttcaggttgtttcaatccccttttgcttctgcagGATGAAAAAATGGATTCGATGGAAGCCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG