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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgcactttgtttcatgatggatatgtttcctattgcatttaccatcataatgaataaaaaaaaaactcatacctttcagGTCAGCCTGCCTGATGTTGGCGATTCAACAGTTAATTTAATGAATGCAATATACACAACAATGCAGTCCCATCTTCAAGGCTATAATCTTTGGCAG

Basic information

species Oryza sativa
transcript LOC_Os05g06510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g06510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G864166_T01 (Zea mays), 3'ss of exon 7
--------------------------------gtaagtttgcactttgtttcatgatggatatg-tttcctattgcat------ttaccat--cataatgaataaaaaaaaaactcatacctttcagGTCAGCCTGCCTGATGTTGGCGATTCAACAGTTAATTTAATGAATGCAATATACACAACAATGCAGTCCCATCTTCAAGGCTATAATCTTTGGCAG
                                  |  |||| | |       |||  |    ||  ||  ||||| |        | ||||  ||| || | |||    |||  |||  | |||||||| || || |||||| | || || ||||| ||| |  | |||||  |||||||||||| |||| || ||||| || |||| |||||||||||||||
gtaggttccacaattggtttgttgctgtatccacatatttgtattgctggaaatgtagccagtgactttttattgaaaaaaaaacttccattccatcattattaacgtgaaagttcactcttttcagGTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATATACACAATAATGGAGCCCCATTTTAAAGGGTATAATCTTTGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661372|gb|CB657647.1|CB657647
EST:     CCCTCTGGAGCAACTTGGGTGAGTCAATCAATAATGTGAAGCTGATTGCA                         GTCAGCCTGCCTGATGTTGGCGATTCAACAGTTAATTTAATGAATGCAATA
genomic: CCCTCTGGAGCAACTTGGGTGAGTCAATCAATAATGTGAAGCTGATTGCAgtaagtttgc ... tacctttcagGTCAGCCTGCCTGATGTTGGCGATTCAACAGTTAATTTAATGAATGCAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcctattgcatttaccatcataatgaataaaaaaaaaactcatacctttcagGTCAGCCTGCCTGATGTTGGCGATTCAACAGTTAATTTAATGAATGCAATATACACAACAATGCAGTCCCATCTTCAAGGCTATAATCTTTGGCAG
                                             tacctttc  CT-rich tract
            atttaccatcataatg  TA-rich tract