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...tagatctaacatacacatacctgtttttataggatgtgtggttggtcatgtatgtttttcttccccataagagaatttttaatcatgcatgccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAAGCTGGTGAAGATTATGATGGCGGTCGCGAGTTGGATGACTTCGTCAAG
species | Oryza sativa |
transcript | LOC_Os05g06430.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACAGACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|58683615|gb|CK072302.1|CK072302
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|27577315|gb|CB000010.1|CB000010
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|163927756|gb|EG710536.1|EG710536
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|27577494|gb|CB000189.1|CB000189
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|58653948|gb|CK042628.1|CK042628
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|58659841|gb|CK048521.1|CK048521
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|58676547|gb|CK065234.1|CK065234
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GCTGACAAACACACTGCC-TGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|58690891|gb|CK079578.1|CK079578
genomic: GCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAEST: gi|12622813|gb|AU173026.1|AU173026
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
EST: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA GTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAAgtatgctttc ... gccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAA
tcatgtatgtttttcttccccataagagaatttttaatcatgcatgccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAAGCTGGTGAAGATTATGATGGCGGTCGCGAGTTGGATGACTTCGTCAAG
ttttaat putative branch site (score: 35)
ccacttc putative PPT
ataagagaatttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatctaacatacacatacctgtttttataggatgtgtggttggtcatgtatgtttttcttccccataagagaatttttaatcatgcatgccacttcagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAAGCTGGTGAAGATTATGATGGCGGTCGCGAGTTGGATGACTTCGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - -catacac
- - - - - - - - atacctg
- - - - - - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca