1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgaggacttattgtctgaacttaagatccatttttttgtgcaacccttgatctctatacctgagcattacttctgtgcctacgaatggttcatcatattataaaacattatctactcaatagcaacatccatggatacttactggcataatgacagcttcttttgtgtctacactgtttgcagGATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGAGGGTGACTTCCTGACCTTCGATGCTTTG
species | Oryza sativa |
transcript | LOC_Os05g05260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCAGACTTGTGATCATGTTTGGTGTTCCTTTCCAGTACACACTCAGCAG GATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGAEST: gi|218486391|gb|FG950822.1|FG950822
genomic: GGCAGACTTGTGATCATGTTTGGTGTTCCTTTCCAGTACACACTCAGCAGgtgaggactt ... ctgtttgcagGATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGA
EST: GGCAGACTTGTGATCATGTTTGGTGTTCCTTTCCAGTACACACTCAGCAG GATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGA
genomic: GGCAGACTTGTGATCATGTTTGGTGTTCCTTTCCAGTACACACTCAGCAGgtgaggactt ... ctgtttgcagGATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGA
ccatggatacttactggcataatgacagcttcttttgtgtctacactgtttgcagGATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGAGGGTGACTTCCTGACCTTCGATGCTTTG
tacttac putative branch site (score: 5)
atactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggacttattgtctgaacttaagatccatttttttgtgcaacccttgatctctatacctgagcattacttctgtgcctacgaatggttcatcatattataaaacattatctactcaatagcaacatccatggatacttactggcataatgacagcttcttttgtgtctacactgtttgcagGATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGAGGGTGACTTCCTGACCTTCGATGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG