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...tgaatgagctgtacacagagaagcaaactctgaatgttcagttcagacttcagacatggcaaatggctgacaagaaaagaaaaactgaaaactactgcagGTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTGAAGATGGACACGTGGATTCCGGCATGGGATCACGAGTTCGAGTTCCCGT
species | Oryza sativa |
transcript | LOC_Os05g03610.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGG GTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTGEST: gi|29614364|gb|CB619377.1|CB619377
genomic: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGGgttagcattc ... actactgcagGTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTG
EST: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGG GTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTGEST: gi|29623983|gb|CB628994.1|CB628994
genomic: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGGgttagcattc ... actactgcagGTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTG
EST: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGG GTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTGEST: gi|117229439|gb|CT859823.1|CT859823
genomic: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGGgttagcattc ... actactgcagGTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTG
EST: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGG GTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTG
genomic: TCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGGgttagcattc ... actactgcagGTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTG
gacttcagacatggcaaatggctgacaagaaaagaaaaactgaaaactactgcagGTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTGAAGATGGACACGTGGATTCCGGCATGGGATCACGAGTTCGAGTTCCCGT
ggctgac putative branch site (score: 15)
aaaagaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgagctgtacacagagaagcaaactctgaatgttcagttcagacttcagacatggcaaatggctgacaagaaaagaaaaactgaaaactactgcagGTGGGTATAGCCGGAGTAGAAGCAGACACGAGGATGGAGCAGACGAAGGTGAAGATGGACACGTGGATTCCGGCATGGGATCACGAGTTCGAGTTCCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
tgaatga
- - - -gctgtac
- - - - - - - - - - -agcaaac
- - - - - - - - - - - - - - -ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa