1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcatataatatacaagctacgtttggaatttgtctggaaacatttcatttttttacatgaactgggaacaatgctttgcattccaatctgcgcatacgaatagtgcatttcatttcaattggtactacggttgtggttttcagtctatctagaagcagttatcaagttaaaatcttgatttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTA
species | Oryza sativa |
transcript | LOC_Os05g01040.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTCCGCATCAAAGAGGCCCAGAATGAGCCAG GTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTEST: gi|88955693|gb|CI091982.1|CI091982
genomic: ACTCCGCATCAAGGAGGCCCAGAATGAGCCAGgtgcatataa ... tttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTT
EST: CAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAG GTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTEST: gi|86432643|gb|CI086254.1|CI086254
genomic: CAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGgtgcatataa ... tttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTT
EST: CTGTGTTCGATACTCCGCATCAA-GAGGCCCAGAATGAGCCAG GTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTEST: gi|86880635|gb|CI321052.1|CI321052
genomic: CTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGgtgcatataa ... tttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTT
EST: CAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAG TTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTEST: gi|27547057|gb|CA765135.2|CA765135
genomic: CAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGgtgcatataa ... tttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTT
EST: CAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAG GTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTT
genomic: CAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGgtgcatataa ... tttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTT
tggttttcagtctatctagaagcagttatcaagttaaaatcttgatttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTA
tcttgat putative branch site (score: 16)
tcttgatttctttc CT-rich tract
ttatcaagttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatataatatacaagctacgtttggaatttgtctggaaacatttcatttttttacatgaactgggaacaatgctttgcattccaatctgcgcatacgaatagtgcatttcatttcaattggtactacggttgtggttttcagtctatctagaagcagttatcaagttaaaatcttgatttctttcagGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT