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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctctgttctgcagtgaaatataagtccataacaagatgtgattgtgtgtgttgtggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcagGGACCTGTATGCGCAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGCTACCCGATCTTTATCGTGAAAATATTGTATTTGTGCCAACTGCAAAACTGGA

Basic information

species Oryza sativa
transcript LOC_Os04g59040.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59040.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G061928_T03 (Zea mays), 3'ss of exon 8
gtaagttctctgttctgcagtgaaatata----agtccataacaagatgtgattgtgtgtgttgtggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcagGGACCTGTATGCGCAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGCTACCCGATCTTTATCGTGAAAATATTGTATTTGTGCCAACTGCAAAACTGGA
|||||  ||| | |   || ||||   |     | ||| | |||| |    ||| |||   || |      | |  |  |     | | ||   | ||  |    | |  ||| ||  || || || | ||| |||||| ||||||||||| ||||| |||||||||||||||||||||| ||  | |   | ||||||  |      | | ||  |||  |  |  | || |  |
gtaag--ctcagcttgacactgaacctttcgctaatccgttacaaaagtgcattctgta-attatttctccgttcggttgtggtgattgttgagtatgtgactcttagtaacacatacttattgatctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAGCAACTATTTATCTGGGCGTCTTGGAATGAGTGTGATTTTAATAAGTCAA

upper sequence: LOC_Os04g59040.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G104918_T03 (Zea mays), 3'ss of exon 8
---------------------gtaagttctctgttctgcagtgaaatataagtccataa--caagatgtgattgtgtgtgttgtggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcagGGACCTGTATGCGCAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGCTACC--CGATCTTTATCGTGAAAATATTGTATTTGTGC-CAACTGCAAAACTGGA
                     | |  |||     ||||     |||| |  |||| | |  |   |  || ||       || ||   |   | |  || ||     || |||| || |    | | ||||| ||  || || |||| ||| ||||||||||||||| || ||||| |||||||||||||||||||||| ||| | |  | || | | |        | ||| ||  | ||   | |  || |     
gtaagctctcggcttgacactgaaccttcgtcactctgttacaaaatttgcgtccttgattctttacttgttttccctccttttgtggtgtttgttgag-tatggaaatgccttgtgaccctcagtaacaca-atacttattgatttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498605|gb|CI141238.1|CI141238
EST:     GATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCAT                         GGACCTGTATGCGCAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGCTAC
genomic: GATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCATgtaagttctc ... ttaatctcagGGACCTGTATGCGCAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGCTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccactattccttttggcatatattgacacatatttttgtttatttaatctcagGGACCTGTATGCGCAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGCTACCCGATCTTTATCGTGAAAATATTGTATTTGTGCCAACTGCAAAACTGGA
                                        tttattt  CT-rich tract
                   atatattgacacatat  TA-rich tract