1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcctcatagtccgttttatggtttaaattgcatatcccatatagtatagtattggtcatgcatacatctgttattgtccttaacaatatgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCAT
species | Oryza sativa |
transcript | LOC_Os04g59040.1 |
intron # | 7 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTGGCCTGCCAEST: gi|86417243|gb|CI031452.1|CI031452
genomic: GTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88266037|gb|CI376939.1|CI376939
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86498205|gb|CI140838.1|CI140838
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88217144|gb|CI216993.1|CI216993
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|33681023|gb|CF309262.1|CF309262
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAEST: gi|88320691|gb|CI525633.1|CI525633
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88985582|gb|CI016291.1|CI016291
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86523613|gb|CI163819.1|CI163819
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|89171018|gb|CI040295.1|CI040295
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86873424|gb|CI341649.1|CI341649
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|33681024|gb|CF309263.1|CF309263
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88384252|gb|CI551178.1|CI551178
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|58603027|gb|CK013555.1|CK013555
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|11026234|gb|AU162835.1|AU162835
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|163918341|gb|EG713193.1|EG713193
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|218494174|gb|FG955165.1|FG955165
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|55434347|gb|CV730295.1|CV730295
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|87007333|gb|CI279004.1|CI279004
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|58671895|gb|CK060581.1|CK060581
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGEST: gi|8527453|gb|AU092268.1|AU092268
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATG
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88450730|gb|CI549816.1|CI549816
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86834579|gb|CI340696.1|CI340696
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88291938|gb|CI532530.1|CI532530
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88963306|gb|CI028322.1|CI028322
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88441295|gb|CI538738.1|CI538738
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|3768325|gb|AU032352.1|AU032352
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88555507|gb|CI485770.1|CI485770
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGAGT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86527296|gb|CI167502.1|CI167502
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88965200|gb|CI009236.1|CI009236
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88984409|gb|CI014964.1|CI014964
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86846050|gb|CI347237.1|CI347237
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86421029|gb|CI057018.1|CI057018
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
agtatagtattggtcatgcatacatctgttattgtccttaacaatatgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCAT
gtccttaac putative branch site
tgttttt putative PPT
ttaacaatatgttttt TA-rich tract