1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattgatgtgatatgtttcttgtttgagaagttcgataagtcatctagttccttgtggaacaattgtttttttctttctaaaaactctttttattaatgtttctttcccaccaacccattgatttgcacatttgttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAGAAATGGAGAAG
species | Oryza sativa |
transcript | LOC_Os04g56580.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTACGATTCTGTATTTCTTGATTCAGTGAACCCAAGCTATGATTACAAG GCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACEST: gi|89188815|gb|CI048551.1|CI048551
genomic: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
EST: CTTGATTCAGTGAACCCAAGCTATGATTACAAG GCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACEST: gi|58694886|gb|CK083573.1|CK083573
genomic: CTTGATTCAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
EST: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAG GCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACEST: gi|2797320|gb|AA750614.1|AA750614
genomic: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
EST: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAG GCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACEST: gi|89184622|gb|CI007047.1|CI007047
genomic: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
EST: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAG GCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACEST: gi|88831041|gb|CI080465.1|CI080465
genomic: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
EST: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAG GCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACEST: gi|86838427|gb|CI327782.1|CI327782
genomic: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
EST: AGTACGATTCTGTATTTCTTGATTCACTGAACCAAAGCTATGATTACAAG GCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACEST: gi|88269970|gb|CI381268.1|CI381268
genomic: AGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
EST: CAGTGAACCAAAGCTATGATTACAAG GCATAGTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
genomic: CAGTGAACCAAAGCTATGATTACAAGgtattgatgt ... gttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTAC
ttttattaatgtttctttcccaccaacccattgatttgcacatttgttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAGAAATGGAGAAG
ttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgatgtgatatgtttcttgtttgagaagttcgataagtcatctagttccttgtggaacaattgtttttttctttctaaaaactctttttattaatgtttctttcccaccaacccattgatttgcacatttgttgttgcagGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAGAAATGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA