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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaaattcaatactactgctaactttcaattggatccacccttctaataaagtgctacatttgcaacagCTATCCATCCTGAAGGTAAACGGAGCATGTTGAAGTTGGCAAGGAGGATGACGGACAACTTCTGTGCAGGGGTGAGCACATCATCTACCCGTGAATGGAG

Basic information

species Oryza sativa
transcript LOC_Os04g48070.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g48070.1 (Oryza sativa), 3'ss of exon 7
lower sequence: AC235534.1_FGT007 (Zea mays), 3'ss of exon 7
------------------------------gtaaagaaattcaatactactgctaactttca-attggatccacccttctaataaagtgctacatttgca-acagCTATCCATCCTGAAGGTAAACGGAGCATGTTGAAGTTGGCAAGGAGGATGACGGACAACTTCTGTGCAGGGGTGAGCACATCATCTACCCGTGAATGGAG
                              ||| | |||| |     |    ||   |  |    | ||  ||    | ||| || ||   ||  ||  | |||||  |   ||  ||||| ||| ||||| |||||||||||||| ||||||||| ||| |||||||| |||||| || || | |||||| |||| ||||||||
gtataggaaatttgaatacacaagattcgtgtacaaaaatccttgcatgtacctgtgtcgcgtgctagagacaaaactgtaaaaatgtttcactcttctacacagCGGTTTCTCTGGAAGGAAAATGGAGCCTGTTGAAGTTGGCACGGAGGATGATGGAGAACTTCTGCGCAGGGATGGGCGCGTCATCTTCCCGCGAATGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687246|gb|CK075933.1|CK075933
EST:     CTTGGCCCTTCTCATGTCTTCTATTGCATTGCCAGAGAACGACTCATCAG                         CTATCCATCCTGAAGGTAAACGGAGCATGTTGAAGTTGGCAAGGAGGATGA
genomic: CTTGGCCCTTCTCATGTCTTCTATTGCATTGCCAGAGAACGACTCATCAGgtaaagaaat ... tttgcaacagCTATCCATCCTGAAGGTAAACGGAGCATGTTGAAGTTGGCAAGGAGGATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgctaactttcaattggatccacccttctaataaagtgctacatttgcaacagCTATCCATCCTGAAGGTAAACGGAGCATGTTGAAGTTGGCAAGGAGGATGACGGACAACTTCTGTGCAGGGGTGAGCACATCATCTACCCGTGAATGGAG
                           ttctaataaa  TA-rich tract