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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accttgctagccccctcactcctgataagttacaaaatgccttttgtataatgtggaagtattttactcattaatacgtattaaatgtgtctttatgcagATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAG

Basic information

species Oryza sativa
transcript LOC_Os04g47240.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g47240.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G175504_T01 (Zea mays), 3'ss of exon 6
-------accttgctagccccctcactcctgataagttacaaaatgccttttgtataatgtggaagtattttactcattaatacgtattaaatgtgtctttatgcagATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAG
       |  || || |     |   | ||||  |   | ||    |   ||  ||| |    | || | ||| |  ||  | | | ||   | ||| | ||  ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||
taatacaattttacttgtgattttctttctga--aaccataattcac---ttaaatactcctca-gtttgttatttttttctccattttgtgtttgtttctac-cagATCAATGGGCAGCACTGTCCTTTTTCATTTAAGGGTAGTCCATACTGGATGGCTCCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677676|gb|CK066363.1|CK066363
EST:     GTTAAGCTTGCAGATTTTGGAATGGCAAAACAT                         ATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATG
genomic: GTTAAGCTTGCAGATTTTGGAATGGCAAAACATgtaagttttt ... ctttatgcagATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtataatgtggaagtattttactcattaatacgtattaaatgtgtctttatgcagATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAG
                       cattaat  putative branch site (score: 3)
                                          tgtcttt  putative PPT
              tattttactcattaat  TA-rich tract