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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttgactttagtcaaagtcaaaacgtcttataacctaagacggaaggagtaacattttgtttttttgcttacagtttcactgacactttcctttgtagGTTGGTAGATCTGGCAGATTCGGCCACCTTGGTTTGGCTGTGAATTTGATCACCTATGAGGACCGTTTTAACTT

Basic information

species Oryza sativa
transcript LOC_Os04g45040.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58663869|gb|CK052555.1|CK052555
EST:     TTGTTATCAATTTTGATTTCCCCAAGAGCGCAGAAACATATCTCCATAGG                         GTTGGTAGATCTGGCAGATTCGGCCACCTTGGTTTGGCTGTGAATTTGATC
genomic: TTGTTATCAATTTTGATTTCCCCAAGAGCGCAGAAACATATCTCCATAGGgtatgcattg ... tcctttgtagGTTGGTAGATCTGGCAGATTCGGCCACCTTGGTTTGGCTGTGAATTTGATC
EST: gi|55411565|gb|CV723941.1|CV723941
EST:     TTGTTATCAATTTTGATTTCCCCAAGAGCGCANAAACATATCTCCATAGG                         GTTGGTAGATCTGGCAGATTCGGCCACCTTGGTTTGGCTGTGAATTTGATC
genomic: TTGTTATCAATTTTGATTTCCCCAAGAGCGCAGAAACATATCTCCATAGGgtatgcattg ... tcctttgtagGTTGGTAGATCTGGCAGATTCGGCCACCTTGGTTTGGCTGTGAATTTGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggagtaacattttgtttttttgcttacagtttcactgacactttcctttgtagGTTGGTAGATCTGGCAGATTCGGCCACCTTGGTTTGGCTGTGAATTTGATCACCTATGAGGACCGTTTTAACTT
                                  cactgac  putative branch site (score: 2)
                                        cactttccttt  CT-rich tract
      taacattttgtttttt  TA-rich tract