Sequence
atgc intronic sequence ATGC exonic sequencegtcagatacactctgaggtgagatgtgccatggacatgaagtatcacgcatcttggtgtctaccagcaactgatagtgttctttagcaggcatggtgctggtttaagttgataggtacctggcccatcatagaaattttgttgcagGATTAACTCCAACCAGATTGATCATAAAAGCAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTG
Basic information
| species | Oryza sativa |
| transcript | LOC_Os04g41100.3 |
| intron # | 7 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os04g41100.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G139038_T01 (Zea mays), 3'ss of exon 7
gtcagatacactctgaggtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagcaggcatggtgctggtttaagttgata-ggtacct------ggcccatcatagaaattttgttgcagGATTAAC--TCCAACCAGATTGATCATAAAAGCAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTG
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-------------------gtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcgactgatagtgttctttagcagGCTTGGTGCCGGTTTGAGTGGATAAGGTTTCTCCTTGTGGCCCATCATAGAAATTTTGTTGCAGGATTAACACTCCATCCAGATTGATCATAAAAGCAAA------------------------------------------------------------------
upper sequence: LOC_Os04g41100.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G179097_T02 (Zea mays), 3'ss of exon 7
gtcagatacactctgaggtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagcaggcatggtgctggtttaagttgata-ggtacct------ggcccatcatagaaattttgttgcagGATTAAC--TCCAACCAGATTGATCATAAAAGCAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTG
| || ||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||| |||| | ||||||| | |||| ||| || ||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||
-------------------gtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcagGCTTGGTACCGGTTTAAATGGATAAGGTTTCTCCTTGTGGCCCATCATAGAAATTTTGTTGCAGGATTAACGCTTCATCCAGATCGATCATAAAAGCAAA------------------------------------------------------------------
upper sequence: LOC_Os04g41100.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G179097_T08 (Zea mays), 3'ss of exon 7
gtcagatacactctgaggtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagcaggcatggtgctggtttaagttgata-ggtacct------ggcccatcatagaaattttgttgcagGATTAAC--TCCAACCAGATTGATCATAAAAGCAG-TCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTG
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-------------------gtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcaggcttggtaccggtttaaatggataaggtttctccttgtggcccatcatagaaattttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC--------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29628989|gb|CB634000.1|CB634000EST: GTTTGGGCTCTATTGATCCTGACTGTCATGCATCATTCTGAATCTATGAG GATTAACTCCAACCAGATTGATCATAAAAGCAGTCTAATCTGCCTGCATCG
genomic: GTTTGGGCTCTATTGATCCTGACTGTCATGCATCATTCTGAATCTATGAGgtcagataca ... tttgttgcagGATTAACTCCAACCAGATTGATCATAAAAGCAGTCTAATCTGCCTGCATCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggtgctggtttaagttgataggtacctggcccatcatagaaattttgttgcagGATTAACTCCAACCAGATTGATCATAAAAGCAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTG
agttgat putative branch site (score: 5)
ttttgtt putative PPT
atcatagaaatttt TA-rich tract
