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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccgcaaagaatgaaatggtgtggcgtagagtacgttctgaataaatagtgtgacatgacatgatctgatctgcattttttttataatatccttctgcagATACTACAATGACTTACATGTTTTTGATTTAGATAATTTCAAG

Basic information

species Oryza sativa
transcript LOC_Os04g40740.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58611209|gb|CK038921.1|CK038921
EST:     CACAAGATCGTGCTATTTGGTGGTTTTTATGACACTCTTAGGGAAGTGAG                         ATACTACAATGACTTACATGTTTTTGATTTAGATAATTTCAAG
genomic: CACAAGATCGTGCTATTTGGTGGTTTTTATGACACTCTTAGGGAAGTGAGgttagtacag ... ccttctgcagATACTACAATGACTTACATGTTTTTGATTTAGATAATTTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtgtgacatgacatgatctgatctgcattttttttataatatccttctgcagATACTACAATGACTTACATGTTTTTGATTTAGATAATTTCAAG
                  atctgat  putative branch site (score: 4)
                                          tatccttct  putative PPT
                       atctgcatttttttta  TA-rich tract