1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaatttaaaatctagctccacacaaaattgtgcagaaaatccactagtttggataagaatgcctcgcgtttgactttttttttctgccatccaattcagGCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGCAATTTGTCAAGTAGAGTTAGAGTCTGGTCAGGGTATATCCATACATGAG
species | Oryza sativa |
transcript | LOC_Os04g37660.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACG GCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGCEST: gi|29619327|gb|CB624339.1|CB624339
genomic: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACGgtttgtactt ... tccaattcagGCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGC
EST: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACG GCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGCEST: gi|58688260|gb|CK076947.1|CK076947
genomic: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACGgtttgtactt ... tccaattcagGCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGC
EST: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACG GCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGCEST: gi|2310423|gb|C26578.1|C26578
genomic: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACGgtttgtactt ... tccaattcagGCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGC
EST: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACG GCTAGGTTCTGNATATCCAGTTCGGGGATATGGTCAAGCTCTTCATATGTG
genomic: GATTTGGTGGAGGAAGTCTTTGAGGATGGATGTCCTTCCCTTTCAAGACGgtttgtactt ... tccaattcagGCTAGATTCTGAATATCCAGTTCGGA-ATATGTTCAAGCTCTTCATATGTG
tagtttggataagaatgcctcgcgtttgactttttttttctgccatccaattcagGCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGCAATTTGTCAAGTAGAGTTAGAGTCTGGTCAGGGTATATCCATACATGAG
gtttgac putative branch site (score: 4)
ctttttttttctgcca CT-rich tract
tttgacttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatttaaaatctagctccacacaaaattgtgcagaaaatccactagtttggataagaatgcctcgcgtttgactttttttttctgccatccaattcagGCTAGATTCTGAATATCCAGTTCGGAATATGTTCAAGCTCTTCATATGTGCAATTTGTCAAGTAGAGTTAGAGTCTGGTCAGGGTATATCCATACATGAG
- - - - - - - -gctccac
- - - - - - - - - - - - - -attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgcc