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gttcatatttgaattccttttgttttctacagtatatttctcgttagtgtaacatcggttgatattttaatttcctgtgaagagcagATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCATCCAAAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATG
species | Oryza sativa |
transcript | LOC_Os04g35190.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTACTATCGTTACTTGAGATTTTTTCCAAGTGGAAAATTCCTCTACAAG ATTTCCCCACAGAAGATTAAGGATGTAGTCAAGTGCATGCATTTCCGGGCAEST: gi|218488546|gb|FG955819.1|FG955819
genomic: GCTACTATCGTTACTTGAGATTTTTTCCAAGTGGAAAATTCCTCTACAAGgttcatattt ... tgaagagcagATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCA
EST: GCTACTATCGTTACTTGAGATTTTTTCCAAGTGGAAAATTCCTCTACAAG ATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCAEST: gi|29645691|gb|CB650698.1|CB650698
genomic: GCTACTATCGTTACTTGAGATTTTTTCCAAGTGGAAAATTCCTCTACAAGgttcatattt ... tgaagagcagATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCA
EST: CCAAGGGGAAAATTCCTCTACAAG ATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCAEST: gi|29655901|gb|CB652176.1|CB652176
genomic: CCAAGTGGAAAATTCCTCTACAAGgttcatattt ... tgaagagcagATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCA
EST: GCTACTATCGTTACTTGAGATTTTTTCCAAGTGGAAAATTCCTCTACAAG ATTTCCCCACAGAAGATTAAAGATGTTGTCAAGTGCATGCATTTCCGGGCA
genomic: GCTACTATCGTTACTTGAGATTTTTTCCAAGTGGAAAATTCCTCTACAAGgttcatattt ... tgaagagcagATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCA
tatatttctcgttagtgtaacatcggttgatattttaatttcctgtgaagagcagATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCATCCAAAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATG
ttttaat putative branch site (score: 55)
tttcctgt CT-rich tract
ttgatattttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcatatttgaattccttttgttttctacagtatatttctcgttagtgtaacatcggttgatattttaatttcctgtgaagagcagATTTCCCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCATCCAAAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG