1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatccatcaactcctcgttgtttgtttacctgtctcttgattttggttgagctgaaagtgattaaaaattctggatttcgctcagGAGAAAGAATCATGGGATTTGAAGGACAATGCTGAGAAGATTGAAGCAGCTGCCAAGAAGAAAGATGAAGGGAATGTGTGGTTCAAGATGGGCAAGTATG
species | Oryza sativa |
transcript | LOC_Os04g28420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCAAACTCCACAGTCTGGTATGAAGTTGAGCTTGTCTCATTCCAGAAG GAGATTTGAATCATGGGATTTGAAGGACAATGCTGACGAAGATTGAAGCAGEST: gi|86424735|gb|CI063496.1|CI063496
genomic: CTGCAAACTCCACAGTCTGGTATGAAGTTGAGCTTGTCTCATTCGAGAAGgtaatccatc ... tttcgctcagGAGA-AAGAATCATGGGATTTGAAGGACAATGCTGA-GAAGATTGAAGCAG
EST: CTGCAAACTCCACAGTCTGGTATGAAGTTGAGCTTGTCTCATTCGAGAAG GAGAAAGAATCATGGGATTTGAAGGACAATGCTGAGAAGATT-A-GCAGCT
genomic: CTGCAAACTCCACAGTCTGGTATGAAGTTGAGCTTGTCTCATTCGAGAAGgtaatccatc ... tttcgctcagGAGAAAGAATCATGGGATTTGAAGGACAATGCTGAGAAGATTGAAGCAGCT
tgtctcttgattttggttgagctgaaagtgattaaaaattctggatttcgctcagGAGAAAGAATCATGGGATTTGAAGGACAATGCTGAGAAGATTGAAGCAGCTGCCAAGAAGAAAGATGAAGGGAATGTGTGGTTCAAGATGGGCAAGTATG
tcttgat putative branch site (score: 4)
tttcgctc putative PPT
aaagtgattaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatccatcaactcctcgttgtttgtttacctgtctcttgattttggttgagctgaaagtgattaaaaattctggatttcgctcagGAGAAAGAATCATGGGATTTGAAGGACAATGCTGAGAAGATTGAAGCAGCTGCCAAGAAGAAAGATGAAGGGAATGTGTGGTTCAAGATGGGCAAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG