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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgataattctatggttcattgtcctattgtctgtgctactgttgttcagagttgatcattacatgttcttttattctttttacagAGTTGTGCAGAGATTAGATCTTATGAAATCAAAAGCATCTGTCCTCAGTTCG

Basic information

species Oryza sativa
transcript LOC_Os04g18010.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g18010.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G455115_T01 (Zea mays), 3'ss of exon 8
-----gtatgataattctatggttcatt-------gtcctatt----gtctgtgctactgttgt----tcagagttgatcattac-atgttcttttattctttttacagAGTTGTGCAGAGATTAGATCTTATGAAATCAAAAGCATCTGTCCTCAGTTCG
     | |  || | | ||  |||||||        || || |    |  | | | | |||| |    |  |  ||||| ||||  ||  | | || || | ||||||||| |||||| |||||||||||||||||||| ||||||||||| || ||||||
gtacggcactattact-tactgttcatttgagaaaatcatacttacagattttacaagtgttttaaactttgtattgattattattattgtttgtttttttgtttacagAGCTGTGCAAAGATTAGATCTTATGAAATCCAAAGCATCTGTTCTTAGTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgctactgttgttcagagttgatcattacatgttcttttattctttttacagAGTTGTGCAGAGATTAGATCTTATGAAATCAAAAGCATCTGTCCTCAGTTCG
                   agttgat  putative branch site (score: 5)
                                 tgttcttttattcttt  putative PPT
                                   ttcttttattcttttt  TA-rich tract