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...ttttgaatttgtcataaacctgtgtatgctgccttcttttttcttatgaacagcatagtatcacaatgctagaccatctttttaattaaaaaaagtgcagGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAG
species | Oryza sativa |
transcript | LOC_Os04g09860.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAG GTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGEST: gi|58678266|gb|CK066953.1|CK066953
genomic: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtat ... aaaagtgcagGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTG
EST: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAG GTTTTAGAAGATTTGCGCACEST: gi|29643625|gb|CB648632.1|CB648632
genomic: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtat ... aaaagtgcagGTTTTAGAAGATTTGCGCAC
EST: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAG GTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTG
genomic: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtat ... aaaagtgcagGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTG
atgaacagcatagtatcacaatgctagaccatctttttaattaaaaaaagtgcagGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAG
ttttaat putative branch site (score: 3)
atctttttaattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgaatttgtcataaacctgtgtatgctgccttcttttttcttatgaacagcatagtatcacaatgctagaccatctttttaattaaaaaaagtgcagGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - cataaac
- - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - -tgccttc
- - - - - - - - - - - - - - - - - - - - -tcttatg
- - - - - - - - - - - - - - - - - - - - - - - - aacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgct