Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacattaagctgttgatccatgaaaagccttccctccagaaacagtataatttactagttaattattactcctagtcaatgcatcagtctgttctaaattctgtatgttcttgcagTGGATGAGGTTGTATCCTACAGGAATGCTGAGAGATCAGTCGACACTCTGCGTAACTCGGGGTTCTTGTATCTGAATTTCAAATCCTACAATGG

Basic information

species Oryza sativa
transcript LOC_Os04g09540.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88283176|gb|CI404622.1|CI404622
EST:     TGCCTATCTTACTAAGTCATGGAAGAG                         TGGATGAGGTTGTATCCTACAGGAATGCTGAGAGATCAGTCGACACTCTGC
genomic: TGCCTATCTTACTAAGTCATGGAAGAGgtaacacatt ... gttcttgcagTGGATGAGGTTGTATCCTACAGGAATGCTGAGAGATCAGTCGACACTCTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attattactcctagtcaatgcatcagtctgttctaaattctgtatgttcttgcagTGGATGAGGTTGTATCCTACAGGAATGCTGAGAGATCAGTCGACACTCTGCGTAACTCGGGGTTCTTGTATCTGAATTTCAAATCCTACAATGG
                              ttctaaa  putative branch site (score: 2)
                                            tgttctt  putative PPT
                              ttctaaatt  TA-rich tract