1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatcatttatattataattctatttcaaagtatggcttactgttgtttatacattgtactattgctaatggagtaatggtattcccggttcattttgtagACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTCTACGACAA
species | Oryza sativa |
transcript | LOC_Os03g62640.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATT ACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTCEST: gi|29674744|gb|CB671019.1|CB671019
genomic: GGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATTgtgagtttaa ... cattttgtagACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTC
EST: GGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATT ACTGATCACAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTCEST: gi|29621718|gb|CB626729.1|CB626729
genomic: GGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATTgtgagtttaa ... cattttgtagACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTC
EST: GGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATT ACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTC
genomic: GGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATTgtgagtttaa ... cattttgtagACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTC
tttatacattgtactattgctaatggagtaatggtattcccggttcattttgtagACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTCTACGACAA
tgctaat putative branch site (score: 2)
ttcatttt putative PPT
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcatttatattataattctatttcaaagtatggcttactgttgtttatacattgtactattgctaatggagtaatggtattcccggttcattttgtagACTGATCAGAAGTTGCGTCTCTGTGACATATGTGGAGCATTTCTAAGTGTCTACGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA