1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttgtgtttccaaaagggaaggtactatgatctccctaactgtagcacctgtaaaagttctctagaaatattaatgcagagtgaattttctgtctgccagAGGACAATTGTTAACAGGCCACTTGCTGGAACAATTAGAAGAGGAAAATCGAAAGCAGAAGACAAAGTTTTAGAACAACTGCTGTTGAGTGATGGAAAGC
species | Oryza sativa |
transcript | LOC_Os03g61120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGCATCAAGTCCTGAAATTCTTACCCGGGT-GAAAAG AGGACAATTGTTAACAGGCCACTTGCTGGAACAATTAGAAGAGGAAAATCGEST: gi|29673715|gb|CB669990.1|CB669990
genomic: TAGCATCAAGTCCTGAAATTCTTACCCGGGTGGAAAAGgtacgctgaa ... tgtctgccagAGGACAATTGTTAACAGGCCACTTGCTGGAACAATTAGAAGAGGAAAATCG
EST: GTTGTATTCTGGTAGCATCAAGTCCTGAAATTCTTACCCGGGTGGAAAAG AGGACAATTGTTAACAGGCCACTTGCTGGAACAATTAGAAGAGGAAAATCG
genomic: GTTGTATTCTGGTAGCATCAAGTCCTGAAATTCTTACCCGGGTGGAAAAGgtacgctgaa ... tgtctgccagAGGACAATTGTTAACAGGCCACTTGCTGGAACAATTAGAAGAGGAAAATCG
cacctgtaaaagttctctagaaatattaatgcagagtgaattttctgtctgccagAGGACAATTGTTAACAGGCCACTTGCTGGAACAATTAGAAGAGGAAAATCGAAAGCAGAAGACAAAGTTTTAGAACAACTGCTGTTGAGTGATGGAAAGC
tattaat putative branch site (score: 10)
ttttctgtct putative PPT
tctagaaatattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgtttccaaaagggaaggtactatgatctccctaactgtagcacctgtaaaagttctctagaaatattaatgcagagtgaattttctgtctgccagAGGACAATTGTTAACAGGCCACTTGCTGGAACAATTAGAAGAGGAAAATCGAAAGCAGAAGACAAAGTTTTAGAACAACTGCTGTTGAGTGATGGAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-ttgtgtt
- - - - tccaaaa
- - - - - - - - - - - - - - - - - - - -ctgtagc
- - - - - - - - - - - - - - - - - - - - - - - acctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgca