1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aacttgtgaccataatatgacttaatgatttcttgcctaattcctgtgttgttgtgttggtgtttcagacagtcactagtaacttgtcttttactgacagGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAA
species | Oryza sativa |
transcript | LOC_Os03g61050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAATGGTGATTTCTGTATCTTACTTCTTTGACCACGA GTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGEST: gi|29616172|gb|CB621184.1|CB621184
genomic: AAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAgtaaggctgc ... ttactgacagGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGG
EST: GATGGCACATAAAAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGA GTATTATGATAAACCAGAACATCTAAAGGCGTTAGGAGGGATTGACATTGG
genomic: GATGGCATACAAGAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAgtaaggctgc ... ttactgacagGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGG
gtgttgttgtgttggtgtttcagacagtcactagtaacttgtcttttactgacagGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAA
tagtaac putative branch site (score: 29)
cttgtctttt CT-rich tract
tctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttgtgaccataatatgacttaatgatttcttgcctaattcctgtgttgttgtgttggtgtttcagacagtcactagtaacttgtcttttactgacagGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAA
- - - - accataa
- - - - - - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - - -attcctg
- - - - - - - - - - - - - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca