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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgcctctttgtattttcatttgcagtttgctcctttcttatcactaacaattttcctgaaaattttgatgtgcatcatggtgagcagAGTGAAG

Basic information

species Oryza sativa
transcript LOC_Os03g58240.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29636549|gb|CB641558.1|CB641558
EST:     ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAG                         AGTGAAG
genomic: ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGgtttgtttgc ... tggtgagcagAGTGAAG
EST: gi|29629845|gb|CB634854.1|CB634854
EST:     ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAG                         AGTGAAG
genomic: ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGgtttgtttgc ... tggtgagcagAGTGAAG
EST: gi|40487583|gb|BX898537.1|BX898537
EST:     ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAG                         AGTGAAGGGGCAAGAT
genomic: ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGgtttgtttgc ... tggtgagcagAGTGAAGGGGCAAGAT
EST: gi|29666666|gb|CB662941.1|CB662941
EST:     ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAG                         AGTGAAG
genomic: ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGgtttgtttgc ... tggtgagcagAGTGAAG
EST: gi|29629844|gb|CB634853.1|CB634853
EST:     ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAG                         AGTGAAG
genomic: ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGgtttgtttgc ... tggtgagcagAGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcttatcactaacaattttcctgaaaattttgatgtgcatcatggtgagcagAGTGAAG
                          aaaattttgat  TA-rich tract